Click here to switch to the map view.

The map label for this gene is bamHIR [H]

Identifier: 220905503

GI number: 220905503

Start: 2702041

End: 2702646

Strand: Direct

Name: bamHIR [H]

Synonym: Ddes_2242

Alternate gene names: 220905503

Gene position: 2702041-2702646 (Clockwise)

Preceding gene: 220905501

Following gene: 220905505

Centisome position: 94.04

GC content: 42.24

Gene sequence:

>606_bases
ATGAATATTGCTCGCAATGAATGTCTTTTCTCATACGGTCAATTTCCCAACTCTGCTGTCTGGAATAACTCATTTTCTAT
GCTGATCAATTTAATTCAAGGAATGGAGCATCCTGTAGGCGCGGGACTTTTTGCAATATTCCCTCAAAGTGGAAAGAAGC
ACGGCGAGGGCAATGGCGTAAAACCCATCAAGGAGATTTTAATGTCCCGCATTCCTCTTGACTGGCAAAGGGAAGGTAGC
TTGCGGGTGCCAGGTGAAGCAAACCCTGGGAAAATTGACATTTTATATTCTCTTGAAGGTCATAATATTGGAATAGAGTG
GGAAACTGGGAATGTTTCATCGAGCCATCGGGCGATTAATAAAATGCTATTGGGCATAGATAGAGGCTTACTTTCAGTGG
GAATACTAATTGTTCCCGTAAAGAATTTCGCGCAATATCTTACTGACAGAATTGGGAATTTTGAAGAACTTGAGCCATAC
TTCCCCGTATGGCGTAAATACAATTGTCATGAAGGAGCACTATATATATTAGGAATTGAACATGACACAACGTCCACATC
AGCCCCTCGGTTTCAGAAAGGGAACGATGGCAGAGCGCTATTTTGA

Upstream 100 bases:

>100_bases
CAAACCAAGCTTGGAACGACCACGCGTCCGCAACTCAATAATTTTAAAAAGCTTTGACCCTCTACACCTCAAGCATCACA
CTCAATTATTAGGTAATTTT

Downstream 100 bases:

>100_bases
AGACTCTTCAACATAATCACTATTGTAATGCAAATCATATTTTAATTCGATTCTTTCTTTGATAGGGGTGATGTCTTCTA
TTTCTATACCTATCCATCTG

Product: BamHI-like type II restriction endonuclease

Products: NA

Alternate protein names: R.BamHI; Endonuclease BamHI; Type II restriction enzyme BamHI [H]

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MNIARNECLFSYGQFPNSAVWNNSFSMLINLIQGMEHPVGAGLFAIFPQSGKKHGEGNGVKPIKEILMSRIPLDWQREGS
LRVPGEANPGKIDILYSLEGHNIGIEWETGNVSSSHRAINKMLLGIDRGLLSVGILIVPVKNFAQYLTDRIGNFEELEPY
FPVWRKYNCHEGALYILGIEHDTTSTSAPRFQKGNDGRALF

Sequences:

>Translated_201_residues
MNIARNECLFSYGQFPNSAVWNNSFSMLINLIQGMEHPVGAGLFAIFPQSGKKHGEGNGVKPIKEILMSRIPLDWQREGS
LRVPGEANPGKIDILYSLEGHNIGIEWETGNVSSSHRAINKMLLGIDRGLLSVGILIVPVKNFAQYLTDRIGNFEELEPY
FPVWRKYNCHEGALYILGIEHDTTSTSAPRFQKGNDGRALF
>Mature_201_residues
MNIARNECLFSYGQFPNSAVWNNSFSMLINLIQGMEHPVGAGLFAIFPQSGKKHGEGNGVKPIKEILMSRIPLDWQREGS
LRVPGEANPGKIDILYSLEGHNIGIEWETGNVSSSHRAINKMLLGIDRGLLSVGILIVPVKNFAQYLTDRIGNFEELEPY
FPVWRKYNCHEGALYILGIEHDTTSTSAPRFQKGNDGRALF

Specific function: Recognizes the double-stranded sequence GGATCC and cleaves after G-1 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011335
- InterPro:   IPR004194
- InterPro:   IPR011338 [H]

Pfam domain/function: PF02923 BamHI [H]

EC number: =3.1.21.4 [H]

Molecular weight: Translated: 22431; Mature: 22431

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIARNECLFSYGQFPNSAVWNNSFSMLINLIQGMEHPVGAGLFAIFPQSGKKHGEGNGV
CCCCCCHHHHHHCCCCCCCEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCC
KPIKEILMSRIPLDWQREGSLRVPGEANPGKIDILYSLEGHNIGIEWETGNVSSSHRAIN
CHHHHHHHHHCCCCCCCCCCEECCCCCCCCEEEEEEEECCCEEEEEEECCCCCHHHHHHH
KMLLGIDRGLLSVGILIVPVKNFAQYLTDRIGNFEELEPYFPVWRKYNCHEGALYILGIE
HHHHHHHHHHHHHCEEEEEHHHHHHHHHHHCCCHHHCCCCCHHHCCCCCCCCCEEEEEEC
HDTTSTSAPRFQKGNDGRALF
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNIARNECLFSYGQFPNSAVWNNSFSMLINLIQGMEHPVGAGLFAIFPQSGKKHGEGNGV
CCCCCCHHHHHHCCCCCCCEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCC
KPIKEILMSRIPLDWQREGSLRVPGEANPGKIDILYSLEGHNIGIEWETGNVSSSHRAIN
CHHHHHHHHHCCCCCCCCCCEECCCCCCCCEEEEEEEECCCEEEEEEECCCCCHHHHHHH
KMLLGIDRGLLSVGILIVPVKNFAQYLTDRIGNFEELEPYFPVWRKYNCHEGALYILGIE
HHHHHHHHHHHHHCEEEEEHHHHHHHHHHHCCCHHHCCCCCHHHCCCCCCCCCEEEEEEC
HDTTSTSAPRFQKGNDGRALF
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1901989; 8145855; 9783752 [H]