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The map label for this gene is yagA [C]

Identifier: 220905491

GI number: 220905491

Start: 2688047

End: 2688835

Strand: Direct

Name: yagA [C]

Synonym: Ddes_2229

Alternate gene names: 220905491

Gene position: 2688047-2688835 (Clockwise)

Preceding gene: 220905490

Following gene: 220905496

Centisome position: 93.55

GC content: 56.27

Gene sequence:

>789_bases
GTGCGTAAGGCATGCGCCATAGTGCTCATCAGTCGGACGCTGTATGCCTATGCACCGACACCGCGCGACGACACCGACGT
TATCGAGACGCTTATCCGGTTGGCCGACAGCTATCCCAGATACGGATTTGGCAAGCTGTTCAGCCTGCTGCGGCCACAGG
GATACCGGTGGAACCACAAGCGGGTTCATCGCATCTACCGTCAACTGAAGCTGCATCTACGGCGTAAAGGGAAGAAGCGA
CTGCCAACACGTAACCCACAGCCCTTGGCCGTTCCACCACAGGCCAACTGCTGCTGGTCAGTGGACTTCATGCATGACTC
GCTCTCCAGCGGACAGCGGTTCCGTACGTTCAACGTGGAGGATGATTACAGCCGAGAATGCCTCGCCATTGAGGTAGACA
CCAGCCTCCCCGCAGCCCGGATATTACGGGTTCTGGACAGGGTGGCGGCATGGCGAGGGTATCCGGAAAAGCTGAGAATG
GACAACGGGCCGGAACTGATCTCGATCCAGATGGCTGAGTGGGCTGAGGCGCATGGAGTGGAGCTGGAGTTCATCCAACC
GGGCAAGCCTACCCAAAACTCGTATGTGGAACGATTTAACAGGACGTATCGGACGGAGGTTCTTGACTTCTACCTGTTCA
GCAGCCTCGCGGAAGTTAAGGAAATCACAGCGAACTGGCTGAAGCAGTACAACGAAGAACGGCCCCATGAGTCCTTGGGC
AACATTCCTCCGGCTGAGTATTTGGAAATCAATTCACCCCAGAAAGTCTCTACCTTCGGGTGGCACTAA

Upstream 100 bases:

>100_bases
TTGAGCACGAGGTCTTGAAGGACATCATAGCAAAAAAGCTCTGAGGCCAACCGAGAAGCGGGAGATCGTCGACTACGCTC
GCGATGAGTTCGGGCTGAGC

Downstream 100 bases:

>100_bases
CTTGGGGAGGTTTACAGTTTTAACCACTCATCACCAGCAGTGACCATGCGTTATCTCGGCATTGAGGACGCCGAAGTTCT
CGAAATCCTCACGCACGAAA

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MRKACAIVLISRTLYAYAPTPRDDTDVIETLIRLADSYPRYGFGKLFSLLRPQGYRWNHKRVHRIYRQLKLHLRRKGKKR
LPTRNPQPLAVPPQANCCWSVDFMHDSLSSGQRFRTFNVEDDYSRECLAIEVDTSLPAARILRVLDRVAAWRGYPEKLRM
DNGPELISIQMAEWAEAHGVELEFIQPGKPTQNSYVERFNRTYRTEVLDFYLFSSLAEVKEITANWLKQYNEERPHESLG
NIPPAEYLEINSPQKVSTFGWH

Sequences:

>Translated_262_residues
MRKACAIVLISRTLYAYAPTPRDDTDVIETLIRLADSYPRYGFGKLFSLLRPQGYRWNHKRVHRIYRQLKLHLRRKGKKR
LPTRNPQPLAVPPQANCCWSVDFMHDSLSSGQRFRTFNVEDDYSRECLAIEVDTSLPAARILRVLDRVAAWRGYPEKLRM
DNGPELISIQMAEWAEAHGVELEFIQPGKPTQNSYVERFNRTYRTEVLDFYLFSSLAEVKEITANWLKQYNEERPHESLG
NIPPAEYLEINSPQKVSTFGWH
>Mature_262_residues
MRKACAIVLISRTLYAYAPTPRDDTDVIETLIRLADSYPRYGFGKLFSLLRPQGYRWNHKRVHRIYRQLKLHLRRKGKKR
LPTRNPQPLAVPPQANCCWSVDFMHDSLSSGQRFRTFNVEDDYSRECLAIEVDTSLPAARILRVLDRVAAWRGYPEKLRM
DNGPELISIQMAEWAEAHGVELEFIQPGKPTQNSYVERFNRTYRTEVLDFYLFSSLAEVKEITANWLKQYNEERPHESLG
NIPPAEYLEINSPQKVSTFGWH

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=272, Percent_Identity=26.1029411764706, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1790724, Length=247, Percent_Identity=25.9109311740891, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789424, Length=247, Percent_Identity=25.9109311740891, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789224, Length=247, Percent_Identity=25.9109311740891, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788305, Length=247, Percent_Identity=25.9109311740891, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787669, Length=247, Percent_Identity=25.9109311740891, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786558, Length=247, Percent_Identity=25.9109311740891, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 30658; Mature: 30658

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKACAIVLISRTLYAYAPTPRDDTDVIETLIRLADSYPRYGFGKLFSLLRPQGYRWNHK
CCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHH
RVHRIYRQLKLHLRRKGKKRLPTRNPQPLAVPPQANCCWSVDFMHDSLSSGQRFRTFNVE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEHHHHHHHHCCCCCEEEECCC
DDYSRECLAIEVDTSLPAARILRVLDRVAAWRGYPEKLRMDNGPELISIQMAEWAEAHGV
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEEHHHHHHHHCC
ELEFIQPGKPTQNSYVERFNRTYRTEVLDFYLFSSLAEVKEITANWLKQYNEERPHESLG
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC
NIPPAEYLEINSPQKVSTFGWH
CCCCHHEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRKACAIVLISRTLYAYAPTPRDDTDVIETLIRLADSYPRYGFGKLFSLLRPQGYRWNHK
CCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHH
RVHRIYRQLKLHLRRKGKKRLPTRNPQPLAVPPQANCCWSVDFMHDSLSSGQRFRTFNVE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEHHHHHHHHCCCCCEEEECCC
DDYSRECLAIEVDTSLPAARILRVLDRVAAWRGYPEKLRMDNGPELISIQMAEWAEAHGV
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEEHHHHHHHHCC
ELEFIQPGKPTQNSYVERFNRTYRTEVLDFYLFSSLAEVKEITANWLKQYNEERPHESLG
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC
NIPPAEYLEINSPQKVSTFGWH
CCCCHHEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]