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The map label for this gene is dcrA [H]

Identifier: 220905489

GI number: 220905489

Start: 2685449

End: 2687269

Strand: Direct

Name: dcrA [H]

Synonym: Ddes_2227

Alternate gene names: 220905489

Gene position: 2685449-2687269 (Clockwise)

Preceding gene: 220905485

Following gene: 220905490

Centisome position: 93.46

GC content: 55.13

Gene sequence:

>1821_bases
ATGACCATAAAAAATGCCACATCCTGTATAAATCTGGCCACTATCGCCGCCATTGCCTTTGTTTGCGGCACCCTGCTTCT
TTATGCGCAATCAAGCCAGCGTGTAGAAGAAGTGATGGAAACCAAGGCAATTGTCGTCGCCTTGGGTGACGAACTGCGCC
AAAGTTCCGTAAGCCTGACAAGAAACGTGCGGATGTATGCTGTTACCGGTGATAAAAAGTATGAAGATGCCTACAATGCC
GTTCTTGATGAGCGGTCGGGCAAAATTCCCCGCTTCAGCAACAGGGGCATTTTTCCCAACGAAAAGCACAACCTGCTTGA
ACTGCTTGCCAAGTATAAGGTAACCGCCGAAGAAATGGCCTATGTTACCGCCGCCAACAATCTTTCAAACAATCTGGTTC
CGCTCGAAGTGGAGGCCATGAACCTGGTCAAGGGGCTTTATAAAGATGCTGGCGGCCAGTATACCGTCAAGGGCACACCG
GATAAGGAACGCGCCATAAGCATTGTATACGGCAAGGAATATGAGTCCCTTGCCAAGCCGATTATGGACAAGATGGATGT
TTTTGTGGCCGCCCTTGAAAGCCGGACACGGCAAGAGGTCAACACTGTTGCCGCAAGAAACGACCTGTATGAAATCATCG
TCTTTGCCAGCCTGGCCGCTGCCGCAGGCATTTGCCTGGTGTCCATTATCTATTCCAGAAAAAACGTCATCGCGCCCCTT
CTGCTCACAACGGACTTTGCCCAGAAGGTGGCGGACGGCGATTTTGACAGCAGCATCGACGCCTCGTCCGCAAACGAAAT
CGGCACACTGCGAAATGCGTTGAATACAATGGTCGCGGCCAGCAAAAAGTTCATTCACAATGCCGAATCCGAATCAAAAA
GCGCGCGCGAGCAGGCGGAAAAAGCTACACAGGCCATGCGTCAGGCAGACGAAGCCAGCCGCGAAGCGCAGGAAAAAACC
GCTGTACTGCTTGAAATAGCACAACAGCTGGAGCAGGTTGCGTCTGCTGTTTCTTCTGCAGCGGGCCAACTGTCTACCGA
AATAGAACAGGCCGACCGCAGCGCCGGCGAGTCTGCCCAGAGCTTGTCCGAAGCGGCTACCGCCATGAACGAAATGAACG
CCACCGTGCAAGAGGTGGCCCGCAACGCCTCCTCAGCCGCCGCCGTCTCTGCGGAAACAAAAGCCAATGCGGAAAACGGG
GCCCAAATAGTGCAGAACGCACTTGCAAGCATTGATGAAGTGCACACGGTGTCACTGGCCCTCAAGGACGACATGAGCCG
CCTTGATACGCACGCGCAGGCCATCACCCATATTATGAACGTCATCTCGGATATTGCCGACCAGACCAACCTGCTGGCCC
TCAATGCCGCCATTGAAGCCGCGCGCGCCGGAGACGCCGGACGGGGCTTCGCCGTAGTGGCAGACGAGGTGCGCAAACTG
GCGGAAAAAACCGTGGCTTCAACCAATGATGTGGGCAATGCCATTGCCGCCATCCAGAGCAGTACAGCACAGAGCGTCAA
ATCTATGGATTCCGCCCTGAAGGCAGTGGACACCGCCACCACGTATGCAGGACAGTCCGGCGATGCCCTGCGCCAGATCG
TAAAAAATGTGGAGACCACCGCAGATCAGGTCAGCGCCATCGCCACAGCCAGCGAAGAACAGTCTGCCGCCAGTGAAGAG
ATCAACCAGTCCATAGTGCATGTAAATGCCATGTCCGGCCAGACGGCGCAGGCAATGGCCGAAGCCAACCACGCGGTCAC
CAACCTTGCCCGGCAAGCCGAACGGCTGACGCAGCTTATCACCAGGATGAAGCAGAACTGA

Upstream 100 bases:

>100_bases
ATCAAAATGCGTGCACATCCGTTTTTATATATAGAAAACTTGACATTACTTCTGGCAGCTTTTCCAACCAACAGGCTTAA
CCAGATCCGGAGCACGCGTC

Downstream 100 bases:

>100_bases
CGAAAAAGAGAGTGCGGGTGAGGGAAAAACACGCGCAAAAAAGGGGCGCATGCAGGACGCGGCTTGCACGGATTTTACCG
GCAATACCCCCCACGCCGCA

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 606; Mature: 605

Protein sequence:

>606_residues
MTIKNATSCINLATIAAIAFVCGTLLLYAQSSQRVEEVMETKAIVVALGDELRQSSVSLTRNVRMYAVTGDKKYEDAYNA
VLDERSGKIPRFSNRGIFPNEKHNLLELLAKYKVTAEEMAYVTAANNLSNNLVPLEVEAMNLVKGLYKDAGGQYTVKGTP
DKERAISIVYGKEYESLAKPIMDKMDVFVAALESRTRQEVNTVAARNDLYEIIVFASLAAAAGICLVSIIYSRKNVIAPL
LLTTDFAQKVADGDFDSSIDASSANEIGTLRNALNTMVAASKKFIHNAESESKSAREQAEKATQAMRQADEASREAQEKT
AVLLEIAQQLEQVASAVSSAAGQLSTEIEQADRSAGESAQSLSEAATAMNEMNATVQEVARNASSAAAVSAETKANAENG
AQIVQNALASIDEVHTVSLALKDDMSRLDTHAQAITHIMNVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKL
AEKTVASTNDVGNAIAAIQSSTAQSVKSMDSALKAVDTATTYAGQSGDALRQIVKNVETTADQVSAIATASEEQSAASEE
INQSIVHVNAMSGQTAQAMAEANHAVTNLARQAERLTQLITRMKQN

Sequences:

>Translated_606_residues
MTIKNATSCINLATIAAIAFVCGTLLLYAQSSQRVEEVMETKAIVVALGDELRQSSVSLTRNVRMYAVTGDKKYEDAYNA
VLDERSGKIPRFSNRGIFPNEKHNLLELLAKYKVTAEEMAYVTAANNLSNNLVPLEVEAMNLVKGLYKDAGGQYTVKGTP
DKERAISIVYGKEYESLAKPIMDKMDVFVAALESRTRQEVNTVAARNDLYEIIVFASLAAAAGICLVSIIYSRKNVIAPL
LLTTDFAQKVADGDFDSSIDASSANEIGTLRNALNTMVAASKKFIHNAESESKSAREQAEKATQAMRQADEASREAQEKT
AVLLEIAQQLEQVASAVSSAAGQLSTEIEQADRSAGESAQSLSEAATAMNEMNATVQEVARNASSAAAVSAETKANAENG
AQIVQNALASIDEVHTVSLALKDDMSRLDTHAQAITHIMNVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKL
AEKTVASTNDVGNAIAAIQSSTAQSVKSMDSALKAVDTATTYAGQSGDALRQIVKNVETTADQVSAIATASEEQSAASEE
INQSIVHVNAMSGQTAQAMAEANHAVTNLARQAERLTQLITRMKQN
>Mature_605_residues
TIKNATSCINLATIAAIAFVCGTLLLYAQSSQRVEEVMETKAIVVALGDELRQSSVSLTRNVRMYAVTGDKKYEDAYNAV
LDERSGKIPRFSNRGIFPNEKHNLLELLAKYKVTAEEMAYVTAANNLSNNLVPLEVEAMNLVKGLYKDAGGQYTVKGTPD
KERAISIVYGKEYESLAKPIMDKMDVFVAALESRTRQEVNTVAARNDLYEIIVFASLAAAAGICLVSIIYSRKNVIAPLL
LTTDFAQKVADGDFDSSIDASSANEIGTLRNALNTMVAASKKFIHNAESESKSAREQAEKATQAMRQADEASREAQEKTA
VLLEIAQQLEQVASAVSSAAGQLSTEIEQADRSAGESAQSLSEAATAMNEMNATVQEVARNASSAAAVSAETKANAENGA
QIVQNALASIDEVHTVSLALKDDMSRLDTHAQAITHIMNVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLA
EKTVASTNDVGNAIAAIQSSTAQSVKSMDSALKAVDTATTYAGQSGDALRQIVKNVETTADQVSAIATASEEQSAASEEI
NQSIVHVNAMSGQTAQAMAEANHAVTNLARQAERLTQLITRMKQN

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=395, Percent_Identity=29.1139240506329, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI2367378, Length=414, Percent_Identity=26.3285024154589, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI1788194, Length=463, Percent_Identity=27.4298056155508, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788195, Length=248, Percent_Identity=32.258064516129, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789453, Length=267, Percent_Identity=25.8426966292135, Blast_Score=86, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 64496; Mature: 64365

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKNATSCINLATIAAIAFVCGTLLLYAQSSQRVEEVMETKAIVVALGDELRQSSVSLT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCHHHHHHHHHHH
RNVRMYAVTGDKKYEDAYNAVLDERSGKIPRFSNRGIFPNEKHNLLELLAKYKVTAEEMA
HCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHH
YVTAANNLSNNLVPLEVEAMNLVKGLYKDAGGQYTVKGTPDKERAISIVYGKEYESLAKP
HHHHHCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEECCCCCHHHEEEEEECCCHHHHHHH
IMDKMDVFVAALESRTRQEVNTVAARNDLYEIIVFASLAAAAGICLVSIIYSRKNVIAPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLTTDFAQKVADGDFDSSIDASSANEIGTLRNALNTMVAASKKFIHNAESESKSAREQAE
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KATQAMRQADEASREAQEKTAVLLEIAQQLEQVASAVSSAAGQLSTEIEQADRSAGESAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
SLSEAATAMNEMNATVQEVARNASSAAAVSAETKANAENGAQIVQNALASIDEVHTVSLA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LKDDMSRLDTHAQAITHIMNVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHH
AEKTVASTNDVGNAIAAIQSSTAQSVKSMDSALKAVDTATTYAGQSGDALRQIVKNVETT
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ADQVSAIATASEEQSAASEEINQSIVHVNAMSGQTAQAMAEANHAVTNLARQAERLTQLI
HHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TRMKQN
HHHHCC
>Mature Secondary Structure 
TIKNATSCINLATIAAIAFVCGTLLLYAQSSQRVEEVMETKAIVVALGDELRQSSVSLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCHHHHHHHHHHH
RNVRMYAVTGDKKYEDAYNAVLDERSGKIPRFSNRGIFPNEKHNLLELLAKYKVTAEEMA
HCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHH
YVTAANNLSNNLVPLEVEAMNLVKGLYKDAGGQYTVKGTPDKERAISIVYGKEYESLAKP
HHHHHCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEECCCCCHHHEEEEEECCCHHHHHHH
IMDKMDVFVAALESRTRQEVNTVAARNDLYEIIVFASLAAAAGICLVSIIYSRKNVIAPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLTTDFAQKVADGDFDSSIDASSANEIGTLRNALNTMVAASKKFIHNAESESKSAREQAE
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KATQAMRQADEASREAQEKTAVLLEIAQQLEQVASAVSSAAGQLSTEIEQADRSAGESAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
SLSEAATAMNEMNATVQEVARNASSAAAVSAETKANAENGAQIVQNALASIDEVHTVSLA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LKDDMSRLDTHAQAITHIMNVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHH
AEKTVASTNDVGNAIAAIQSSTAQSVKSMDSALKAVDTATTYAGQSGDALRQIVKNVETT
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ADQVSAIATASEEQSAASEEINQSIVHVNAMSGQTAQAMAEANHAVTNLARQAERLTQLI
HHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TRMKQN
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]