Click here to switch to the map view.

The map label for this gene is rpoZ

Identifier: 220905423

GI number: 220905423

Start: 2604900

End: 2605136

Strand: Direct

Name: rpoZ

Synonym: Ddes_2161

Alternate gene names: 220905423

Gene position: 2604900-2605136 (Clockwise)

Preceding gene: 220905419

Following gene: 220905424

Centisome position: 90.65

GC content: 56.54

Gene sequence:

>237_bases
ATGGCCCGTATTACTGTTGAAGATTGCCAGGAGCGCGTGGATAACCGCTTTCTGCTGGTGCAGATGGCTATCAAACGTGT
GCATCAATACCGCGAAGGTTACGAACCCCTTGTGGAATCGCGCAACAAGGAAGTGGTCACCGCCCTGCGTGAAATAGCTG
CGGGCAAGGTGCTGCCCGATGACGACGCTCTTTACACGCCTCCTGCAGAACAGGCCGCGGCCGTTAACGAAGGCTAG

Upstream 100 bases:

>100_bases
CCCTTTACAAACGGGCGGGCGGTATTAATTCCAAAACGAACTGAGGCGAAGCACTTCGCCACAGACTGGCGGCTCCGGCC
GCTCACACTACGGAGGCAGT

Downstream 100 bases:

>100_bases
GCGTCCGCCGGAATACACGCCGCAAGGCGGGCTGCACCGGACCGGCAAAGCGGAACGCCCGTGAACAATACGAGGCAGAC
CTTTTTTCGCCGAAAGCCGG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 78; Mature: 77

Protein sequence:

>78_residues
MARITVEDCQERVDNRFLLVQMAIKRVHQYREGYEPLVESRNKEVVTALREIAAGKVLPDDDALYTPPAEQAAAVNEG

Sequences:

>Translated_78_residues
MARITVEDCQERVDNRFLLVQMAIKRVHQYREGYEPLVESRNKEVVTALREIAAGKVLPDDDALYTPPAEQAAAVNEG
>Mature_77_residues
ARITVEDCQERVDNRFLLVQMAIKRVHQYREGYEPLVESRNKEVVTALREIAAGKVLPDDDALYTPPAEQAAAVNEG

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_DESDA (B8J412)

Other databases:

- EMBL:   CP001358
- RefSeq:   YP_002480735.1
- GeneID:   7285877
- GenomeReviews:   CP001358_GR
- KEGG:   dds:Ddes_2161
- HOGENOM:   HBG742204
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 8799; Mature: 8668

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITVEDCQERVDNRFLLVQMAIKRVHQYREGYEPLVESRNKEVVTALREIAAGKVLPD
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHCCCCCCC
DDALYTPPAEQAAAVNEG
CCCCCCCCCHHHHCCCCC
>Mature Secondary Structure 
ARITVEDCQERVDNRFLLVQMAIKRVHQYREGYEPLVESRNKEVVTALREIAAGKVLPD
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHCCCCCCC
DDALYTPPAEQAAAVNEG
CCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA