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The map label for this gene is radC [C]

Identifier: 220904890

GI number: 220904890

Start: 1950793

End: 1951482

Strand: Direct

Name: radC [C]

Synonym: Ddes_1625

Alternate gene names: 220904890

Gene position: 1950793-1951482 (Clockwise)

Preceding gene: 220904889

Following gene: 220904891

Centisome position: 67.89

GC content: 60.87

Gene sequence:

>690_bases
ATGACAACAACGTCAGGTTCCATACCATCGCACACAGGCCACCGGGCCAGACTGCGTGAGCGCTTTGAGCGCGATCCCGC
CGGAATGGCGGATTATGAGGTTCTGGAGCTGCTCTTGGGGTACAGTCTCACACGCAAGGACACCAAACCCCTGGCCAAGG
AACTGCTGCGCCGTTTTGGCGGCATCCGGGGCGTTATGGACGCGAGACCTGATGAACTTCTGGCCGTACCCGGCTTTGGA
CCGGGACTCATGACCTTTTTCACGGCTCTGCGCGAAACCTATAGCCGCTATACGGACTCGGCCGTGCGCAAGCGCGAGGT
TCTTGCCACCCCACAGGCGGTGGCCCGTATGGCCCAAAGCCGACTGGCCGGCTGCCCCCATGAGGAATGCTGGCTGGCTC
TGGTAGACCAGCGCAACAGGCTTACGGCCTGGGAACGCTTGCGCCAGGGCGGCGTGGCCGAGGTTCCCGTACAGCCAAGA
GACGTGTTTGAAGCGGCGCTGTTGCGCAAGGCCAGCGGCATTATCGTGGTGCACAACCACCCCGGCGGCAATCCTGCCCC
TTCGGAGGCGGACAAGACCTTTACCGCAGAACTGCAAAGGCTTGCGCCGCAACTGGGCCTGCGTTTTCTTGATCACGTTA
TTGTTACAGAGGGAGACTGCTACAGCATCACACAGATGCAGACCATATAG

Upstream 100 bases:

>100_bases
CCCGGGCGGGCCTTACGCCTTGTTTTTTGCCCTCTGAAACGATAATTTCCCTGTAGCCATTCCCCTGCCCTCTTGCATAA
CCTTCAAGACTGCTTACCTT

Downstream 100 bases:

>100_bases
GCAGTCAGGGAGAATATATGGCCGATTACAACGACAAGAACTATTTGTTGCACATGAGCGGGCCTGATTCCGACACCGGG
CCTGGCATCGAAAACGAAGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTTTSGSIPSHTGHRARLRERFERDPAGMADYEVLELLLGYSLTRKDTKPLAKELLRRFGGIRGVMDARPDELLAVPGFG
PGLMTFFTALRETYSRYTDSAVRKREVLATPQAVARMAQSRLAGCPHEECWLALVDQRNRLTAWERLRQGGVAEVPVQPR
DVFEAALLRKASGIIVVHNHPGGNPAPSEADKTFTAELQRLAPQLGLRFLDHVIVTEGDCYSITQMQTI

Sequences:

>Translated_229_residues
MTTTSGSIPSHTGHRARLRERFERDPAGMADYEVLELLLGYSLTRKDTKPLAKELLRRFGGIRGVMDARPDELLAVPGFG
PGLMTFFTALRETYSRYTDSAVRKREVLATPQAVARMAQSRLAGCPHEECWLALVDQRNRLTAWERLRQGGVAEVPVQPR
DVFEAALLRKASGIIVVHNHPGGNPAPSEADKTFTAELQRLAPQLGLRFLDHVIVTEGDCYSITQMQTI
>Mature_228_residues
TTTSGSIPSHTGHRARLRERFERDPAGMADYEVLELLLGYSLTRKDTKPLAKELLRRFGGIRGVMDARPDELLAVPGFGP
GLMTFFTALRETYSRYTDSAVRKREVLATPQAVARMAQSRLAGCPHEECWLALVDQRNRLTAWERLRQGGVAEVPVQPRD
VFEAALLRKASGIIVVHNHPGGNPAPSEADKTFTAELQRLAPQLGLRFLDHVIVTEGDCYSITQMQTI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=199, Percent_Identity=30.1507537688442, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1788997, Length=105, Percent_Identity=37.1428571428571, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI2367100, Length=118, Percent_Identity=33.8983050847458, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788312, Length=107, Percent_Identity=35.5140186915888, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25481; Mature: 25349

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTSGSIPSHTGHRARLRERFERDPAGMADYEVLELLLGYSLTRKDTKPLAKELLRRFG
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHC
GIRGVMDARPDELLAVPGFGPGLMTFFTALRETYSRYTDSAVRKREVLATPQAVARMAQS
CCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
RLAGCPHEECWLALVDQRNRLTAWERLRQGGVAEVPVQPRDVFEAALLRKASGIIVVHNH
HHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEECC
PGGNPAPSEADKTFTAELQRLAPQLGLRFLDHVIVTEGDCYSITQMQTI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCC
>Mature Secondary Structure 
TTTSGSIPSHTGHRARLRERFERDPAGMADYEVLELLLGYSLTRKDTKPLAKELLRRFG
CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHC
GIRGVMDARPDELLAVPGFGPGLMTFFTALRETYSRYTDSAVRKREVLATPQAVARMAQS
CCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
RLAGCPHEECWLALVDQRNRLTAWERLRQGGVAEVPVQPRDVFEAALLRKASGIIVVHNH
HHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEECC
PGGNPAPSEADKTFTAELQRLAPQLGLRFLDHVIVTEGDCYSITQMQTI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA