| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is pqqL [C]
Identifier: 220904343
GI number: 220904343
Start: 1253230
End: 1255866
Strand: Direct
Name: pqqL [C]
Synonym: Ddes_1070
Alternate gene names: 220904343
Gene position: 1253230-1255866 (Clockwise)
Preceding gene: 220904342
Following gene: 220904344
Centisome position: 43.61
GC content: 58.78
Gene sequence:
>2637_bases ATGCGGCGTTTTTTTTCATTTGCGGCTCTGGCATTACTGCTTGCTCTGGCCTGCCCGGCAATTGCGGCCAGTGATAAACC AGCCCAGGGGGATGACAGCGGGGTGCTTACGCGTCTGCCCAACGGGCTTACCGTCTATATTGTGAAGGATGTACGTTTTC CCCTTGTAGCCACGCGCCTGTATGTACGCACAGGCTCTGCCAATGAAAAACCTGATCAGGCGGGTATCAGTCACCTGCTT GAGCATATGGTGTTCAAGGGTACGGAGCACAGGCCAAAGGGCCAGGTGGCTCAGGATGTGGAGGCGCTGGGCGGCTACCT CAATGCTGCCACCAGCTTTGACAAGACATGGTACATGACCGATATGCCCGCCGCGCATTGGCGCACCGGCATGGATGTGG TCAAGGAAATGGCTTTCCAGCCTTCGCTGGATCCAAAAGAGCTGGAATCTGAAAAGGAAGTGGTCATTTCCGAGCTTGAA GGCGATCAGGACTCGCCCATGAGCAGGCTTTTTGAAAGCCTGCAGACTTCTGCCTTGCAAAACACGGTTTACGGGCGGCC CATCATCGGCTTTAAAGACACCATCCGGGCAGTCACGGCCGAGGATCTGCGTGCGTATGTGCGGCACTGGTATCAACCGC AAAACATGCTGCTGCTGGTAGCCGGCGATATTGATCCGCAGGCGGTGCTGGCGTATAGCCAGAAGCTTTTTGGCGGCCTG ACCAATAACGGCGACCTTGCCGAACCGCAACCCGTAAATCTGGCCGATGCTTCGGGCGGGCCGCGGGTAGAGGTTATCTA CGGCCCCTGGAGCAAGGTTTATATGGGTATGGCTTTTCCCGTACCCGGCCTGCGCGACCTGCGTTCTGTGGATCTGGATG TGCTCTGCTATCTCCTGGGTGGCGACGGTACATCCGAACTGTACCGCAAGTTCAAATATGAAAAACAGATGGTAGACAGC ATCGGCATGGGCAACATGAGCCTGTCCCGTGCTGGTCTTGTCTATCTGAGCGCCCAGCTTGATGTGGACAAGGTGGAGCC CTTCTGGCGTGAACTGACCAGGGACATGGCGGCCCTCAAGGCCGGGCAGTTCAGGCCGGAAGCCATTGAGCGGGCCAGGT TCAACCTTGAGGATAATATGGACAGGGCAGGCGAGACCCTCAATGGTCTTGCTTCATGGCTCGGCACTGTACAGTTTGAA CTGGGGGGCAAACAGGCCGAGATGAACCTGCGTTTTGCCCAGCGCAATGTGGATGTACCACAACTGGCTCAGGCCCTTGA GCTGTGGCTCAACCCCCGGCAGGCGCGTGTGCGCGTGCTGGCCCCGGAAGGAGCGAAGCTTCCTGACCTGGAGGCCATCC TGCAGCAGAACTGGCCCGGGCCTGAAAGTGATCAGGTGCGAAAGGCACGGGCTTCAAAGGCGGGCGAGCGCGAAGTGGTA CAGCTGGGCGCTGGCCGCACCCTCATTTTGCAACCTGACGCCACGGTTCCCTACGTGGCCGTTGATATGATGCTCCCGGG CGGCAACGCTTTACTCAAGCCAGATTGCCAAGGACTTGCTGGTCTTACGGCCCGCGCGCTTACCTCGGGCATCGGCACGC TGGACGCCCAGGGTGTGGAACGCTTTTTTTCCGACCGCGCAGCGGCCATAGATGCCAGTGCCGGGCTGCAGAGCTTTACC GTCTCCATTACCGGCCCGGCGCGCTTCAATGCAGACTATTTCGCCATACTGGGCGAAGCGTTGCGCAGCCCCAGGTTTGA AGAAAAGGAAATACGGCGTGAAGCGGACAATATGAAAGCCGCCATACGTCAACGGTCCGACAGGCCTTCGTCCTACCTGT TTTCCAAGCTCAACGGATTTCTTTTCCCTGGCGGCCAACCTTACGGCTATGACGGCCTGGGTAATGCGGAAAACCTCGAC CGTTTTGGGGGCAAGGATGTACGCGCCTTCTGGCAGGAACAGATGGGACAGCCCTGGGTCCTTTCCATAGCCGGAGACTT CGACCGTGAGGCCGTGCTGGCCTTCGCCCGGTCCCTGCCTGTACCCCGCACAGATATCCCCGCGCCGGGCGCTCCGGCAT GGGGGCATGATAAAAAACTCGACCTGCACCTCCCCGGCCGCAATCAGGCGCATGTGCTCCAGGTTTTCAAGGCTGTGCCG CCTACCCATGAGGATGCGCCGGCCCTGATGCTGCTTCAGGCCGTGCTTTCCGGTCAGAGCGGTCTGCTGTTCAGCCAGTT GAGAGATGTGGAAGGCCTGGGTTACACGGTGACGGCTTTTTATCGCAGTATGCCCGAAGCAGGAATGATGGCTTTTTACA TAGGCACTACTCCGGACAAAGTGGAGCAGGCCCGTAAAGGTTTTGGCAAGATTATTGCCGACATCAAGGCAAAACCCCTG TCGGCTGCGCAACTGGAGGCCGGGGCAAACCGTCTGCTTGGCGCATACTTTCGCGAACGGCAAAGCCTGGGCGCACGGGC TGCGGATGCCGCCGGTGATGCCCTTTTGCGCCGCCCCTATGACTTTGACCGCCAGCTTATTGAAAAGGCCGCAACCCTGA CGCCTGCTCAGGTGCAGGCCGTGGCCAGGAAATATCTGGAGCAGGAAAACGCTTACGAACTGGTGCTCTTGCCCTGA
Upstream 100 bases:
>100_bases CCTGCAAGGCCATCGCCGTTCGCGTTTCACAGGCACGGCAGCGGCCCACATCATAACAGCGGGCAGACGGGAGTGTCAGG CCTGCAACGCAGGAGGTTTC
Downstream 100 bases:
>100_bases CATACCTGTAGTTCCGCGAAGGTGCGTGACGACAGTGTGTTTTGCCCCCATCAGGCCTTTCAGGTGAAGCCTCTTGCGCG AACCTGGAGCCTGATGGGGT
Product: peptidase M16 domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 878; Mature: 878
Protein sequence:
>878_residues MRRFFSFAALALLLALACPAIAASDKPAQGDDSGVLTRLPNGLTVYIVKDVRFPLVATRLYVRTGSANEKPDQAGISHLL EHMVFKGTEHRPKGQVAQDVEALGGYLNAATSFDKTWYMTDMPAAHWRTGMDVVKEMAFQPSLDPKELESEKEVVISELE GDQDSPMSRLFESLQTSALQNTVYGRPIIGFKDTIRAVTAEDLRAYVRHWYQPQNMLLLVAGDIDPQAVLAYSQKLFGGL TNNGDLAEPQPVNLADASGGPRVEVIYGPWSKVYMGMAFPVPGLRDLRSVDLDVLCYLLGGDGTSELYRKFKYEKQMVDS IGMGNMSLSRAGLVYLSAQLDVDKVEPFWRELTRDMAALKAGQFRPEAIERARFNLEDNMDRAGETLNGLASWLGTVQFE LGGKQAEMNLRFAQRNVDVPQLAQALELWLNPRQARVRVLAPEGAKLPDLEAILQQNWPGPESDQVRKARASKAGEREVV QLGAGRTLILQPDATVPYVAVDMMLPGGNALLKPDCQGLAGLTARALTSGIGTLDAQGVERFFSDRAAAIDASAGLQSFT VSITGPARFNADYFAILGEALRSPRFEEKEIRREADNMKAAIRQRSDRPSSYLFSKLNGFLFPGGQPYGYDGLGNAENLD RFGGKDVRAFWQEQMGQPWVLSIAGDFDREAVLAFARSLPVPRTDIPAPGAPAWGHDKKLDLHLPGRNQAHVLQVFKAVP PTHEDAPALMLLQAVLSGQSGLLFSQLRDVEGLGYTVTAFYRSMPEAGMMAFYIGTTPDKVEQARKGFGKIIADIKAKPL SAAQLEAGANRLLGAYFRERQSLGARAADAAGDALLRRPYDFDRQLIEKAATLTPAQVQAVARKYLEQENAYELVLLP
Sequences:
>Translated_878_residues MRRFFSFAALALLLALACPAIAASDKPAQGDDSGVLTRLPNGLTVYIVKDVRFPLVATRLYVRTGSANEKPDQAGISHLL EHMVFKGTEHRPKGQVAQDVEALGGYLNAATSFDKTWYMTDMPAAHWRTGMDVVKEMAFQPSLDPKELESEKEVVISELE GDQDSPMSRLFESLQTSALQNTVYGRPIIGFKDTIRAVTAEDLRAYVRHWYQPQNMLLLVAGDIDPQAVLAYSQKLFGGL TNNGDLAEPQPVNLADASGGPRVEVIYGPWSKVYMGMAFPVPGLRDLRSVDLDVLCYLLGGDGTSELYRKFKYEKQMVDS IGMGNMSLSRAGLVYLSAQLDVDKVEPFWRELTRDMAALKAGQFRPEAIERARFNLEDNMDRAGETLNGLASWLGTVQFE LGGKQAEMNLRFAQRNVDVPQLAQALELWLNPRQARVRVLAPEGAKLPDLEAILQQNWPGPESDQVRKARASKAGEREVV QLGAGRTLILQPDATVPYVAVDMMLPGGNALLKPDCQGLAGLTARALTSGIGTLDAQGVERFFSDRAAAIDASAGLQSFT VSITGPARFNADYFAILGEALRSPRFEEKEIRREADNMKAAIRQRSDRPSSYLFSKLNGFLFPGGQPYGYDGLGNAENLD RFGGKDVRAFWQEQMGQPWVLSIAGDFDREAVLAFARSLPVPRTDIPAPGAPAWGHDKKLDLHLPGRNQAHVLQVFKAVP PTHEDAPALMLLQAVLSGQSGLLFSQLRDVEGLGYTVTAFYRSMPEAGMMAFYIGTTPDKVEQARKGFGKIIADIKAKPL SAAQLEAGANRLLGAYFRERQSLGARAADAAGDALLRRPYDFDRQLIEKAATLTPAQVQAVARKYLEQENAYELVLLP >Mature_878_residues MRRFFSFAALALLLALACPAIAASDKPAQGDDSGVLTRLPNGLTVYIVKDVRFPLVATRLYVRTGSANEKPDQAGISHLL EHMVFKGTEHRPKGQVAQDVEALGGYLNAATSFDKTWYMTDMPAAHWRTGMDVVKEMAFQPSLDPKELESEKEVVISELE GDQDSPMSRLFESLQTSALQNTVYGRPIIGFKDTIRAVTAEDLRAYVRHWYQPQNMLLLVAGDIDPQAVLAYSQKLFGGL TNNGDLAEPQPVNLADASGGPRVEVIYGPWSKVYMGMAFPVPGLRDLRSVDLDVLCYLLGGDGTSELYRKFKYEKQMVDS IGMGNMSLSRAGLVYLSAQLDVDKVEPFWRELTRDMAALKAGQFRPEAIERARFNLEDNMDRAGETLNGLASWLGTVQFE LGGKQAEMNLRFAQRNVDVPQLAQALELWLNPRQARVRVLAPEGAKLPDLEAILQQNWPGPESDQVRKARASKAGEREVV QLGAGRTLILQPDATVPYVAVDMMLPGGNALLKPDCQGLAGLTARALTSGIGTLDAQGVERFFSDRAAAIDASAGLQSFT VSITGPARFNADYFAILGEALRSPRFEEKEIRREADNMKAAIRQRSDRPSSYLFSKLNGFLFPGGQPYGYDGLGNAENLD RFGGKDVRAFWQEQMGQPWVLSIAGDFDREAVLAFARSLPVPRTDIPAPGAPAWGHDKKLDLHLPGRNQAHVLQVFKAVP PTHEDAPALMLLQAVLSGQSGLLFSQLRDVEGLGYTVTAFYRSMPEAGMMAFYIGTTPDKVEQARKGFGKIIADIKAKPL SAAQLEAGANRLLGAYFRERQSLGARAADAAGDALLRRPYDFDRQLIEKAATLTPAQVQAVARKYLEQENAYELVLLP
Specific function: Unknown
COG id: COG0612
COG function: function code R; Predicted Zn-dependent peptidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M16 family [H]
Homologues:
Organism=Homo sapiens, GI94538354, Length=355, Percent_Identity=23.943661971831, Blast_Score=100, Evalue=1e-20, Organism=Homo sapiens, GI46593007, Length=205, Percent_Identity=26.8292682926829, Blast_Score=99, Evalue=2e-20, Organism=Escherichia coli, GI1787770, Length=211, Percent_Identity=31.2796208530806, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71999683, Length=217, Percent_Identity=27.6497695852535, Blast_Score=103, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17553678, Length=395, Percent_Identity=24.3037974683544, Blast_Score=89, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6323192, Length=209, Percent_Identity=30.1435406698565, Blast_Score=107, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6321813, Length=207, Percent_Identity=25.6038647342995, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21357875, Length=266, Percent_Identity=25.9398496240602, Blast_Score=97, Evalue=6e-20, Organism=Drosophila melanogaster, GI24646943, Length=266, Percent_Identity=25.9398496240602, Blast_Score=97, Evalue=6e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011249 - InterPro: IPR011237 - InterPro: IPR011765 - InterPro: IPR001431 - InterPro: IPR007863 [H]
Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]
EC number: 3.4.99.- [C]
Molecular weight: Translated: 96359; Mature: 96359
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00143 INSULINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRFFSFAALALLLALACPAIAASDKPAQGDDSGVLTRLPNGLTVYIVKDVRFPLVATRL CCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHEECCCCEEEEEEECCCCHHEEEEE YVRTGSANEKPDQAGISHLLEHMVFKGTEHRPKGQVAQDVEALGGYLNAATSFDKTWYMT EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE DMPAAHWRTGMDVVKEMAFQPSLDPKELESEKEVVISELEGDQDSPMSRLFESLQTSALQ CCCHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH NTVYGRPIIGFKDTIRAVTAEDLRAYVRHWYQPQNMLLLVAGDIDPQAVLAYSQKLFGGL HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCC TNNGDLAEPQPVNLADASGGPRVEVIYGPWSKVYMGMAFPVPGLRDLRSVDLDVLCYLLG CCCCCCCCCCCCCEECCCCCCEEEEEECCHHHHHHCCCCCCCCHHHHHHCCHHHEEEEEC GDGTSELYRKFKYEKQMVDSIGMGNMSLSRAGLVYLSAQLDVDKVEPFWRELTRDMAALK CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHCCHHHHHHHHHHHHHH AGQFRPEAIERARFNLEDNMDRAGETLNGLASWLGTVQFELGGKQAEMNLRFAQRNVDVP CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEHHHCCCCHH QLAQALELWLNPRQARVRVLAPEGAKLPDLEAILQQNWPGPESDQVRKARASKAGEREVV HHHHHHHHHCCCCHHEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH QLGAGRTLILQPDATVPYVAVDMMLPGGNALLKPDCQGLAGLTARALTSGIGTLDAQGVE EECCCCEEEECCCCCCCEEEEEEEECCCCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHH RFFSDRAAAIDASAGLQSFTVSITGPARFNADYFAILGEALRSPRFEEKEIRREADNMKA HHHCCHHHHEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH AIRQRSDRPSSYLFSKLNGFLFPGGQPYGYDGLGNAENLDRFGGKDVRAFWQEQMGQPWV HHHHHCCCCHHHHHHHHCCEECCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEE LSIAGDFDREAVLAFARSLPVPRTDIPAPGAPAWGHDKKLDLHLPGRNQAHVLQVFKAVP EEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCC PTHEDAPALMLLQAVLSGQSGLLFSQLRDVEGLGYTVTAFYRSMPEAGMMAFYIGTTPDK CCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHH VEQARKGFGKIIADIKAKPLSAAQLEAGANRLLGAYFRERQSLGARAADAAGDALLRRPY HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC DFDRQLIEKAATLTPAQVQAVARKYLEQENAYELVLLP HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEC >Mature Secondary Structure MRRFFSFAALALLLALACPAIAASDKPAQGDDSGVLTRLPNGLTVYIVKDVRFPLVATRL CCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHEECCCCEEEEEEECCCCHHEEEEE YVRTGSANEKPDQAGISHLLEHMVFKGTEHRPKGQVAQDVEALGGYLNAATSFDKTWYMT EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE DMPAAHWRTGMDVVKEMAFQPSLDPKELESEKEVVISELEGDQDSPMSRLFESLQTSALQ CCCHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH NTVYGRPIIGFKDTIRAVTAEDLRAYVRHWYQPQNMLLLVAGDIDPQAVLAYSQKLFGGL HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCC TNNGDLAEPQPVNLADASGGPRVEVIYGPWSKVYMGMAFPVPGLRDLRSVDLDVLCYLLG CCCCCCCCCCCCCEECCCCCCEEEEEECCHHHHHHCCCCCCCCHHHHHHCCHHHEEEEEC GDGTSELYRKFKYEKQMVDSIGMGNMSLSRAGLVYLSAQLDVDKVEPFWRELTRDMAALK CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHCCHHHHHHHHHHHHHH AGQFRPEAIERARFNLEDNMDRAGETLNGLASWLGTVQFELGGKQAEMNLRFAQRNVDVP CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEHHHCCCCHH QLAQALELWLNPRQARVRVLAPEGAKLPDLEAILQQNWPGPESDQVRKARASKAGEREVV HHHHHHHHHCCCCHHEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH QLGAGRTLILQPDATVPYVAVDMMLPGGNALLKPDCQGLAGLTARALTSGIGTLDAQGVE EECCCCEEEECCCCCCCEEEEEEEECCCCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHH RFFSDRAAAIDASAGLQSFTVSITGPARFNADYFAILGEALRSPRFEEKEIRREADNMKA HHHCCHHHHEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH AIRQRSDRPSSYLFSKLNGFLFPGGQPYGYDGLGNAENLDRFGGKDVRAFWQEQMGQPWV HHHHHCCCCHHHHHHHHCCEECCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEE LSIAGDFDREAVLAFARSLPVPRTDIPAPGAPAWGHDKKLDLHLPGRNQAHVLQVFKAVP EEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCC PTHEDAPALMLLQAVLSGQSGLLFSQLRDVEGLGYTVTAFYRSMPEAGMMAFYIGTTPDK CCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHH VEQARKGFGKIIADIKAKPLSAAQLEAGANRLLGAYFRERQSLGARAADAAGDALLRRPY HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC DFDRQLIEKAATLTPAQVQAVARKYLEQENAYELVLLP HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA