| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is braF [H]
Identifier: 220904341
GI number: 220904341
Start: 1251435
End: 1252256
Strand: Direct
Name: braF [H]
Synonym: Ddes_1068
Alternate gene names: 220904341
Gene position: 1251435-1252256 (Clockwise)
Preceding gene: 220904340
Following gene: 220904342
Centisome position: 43.55
GC content: 57.18
Gene sequence:
>822_bases ATGAGCGAGTTTATTCTGCCCAGCCCCCCGCATTATGAAGGCGCCTTGCTTCTCGCCCGGGATGTGACCATGCGCTTTGG CGGCGTTACTGCCGTGAGCGAGCTTTCACTGGCCCTGCCCAAGGGAAGCATCGCAGGCATCATTGGACCGAACGGTGCGG GAAAAACAACGGCCTTCAACGTGCTCAGCGGATTTTACACGCCGCAGGGTGGAGATGTCATTTTTGACGGACAGAGCATC AAGGGCCGGAAGCCCTATGATATCTGCCGTCAGGGCATGGCCCGCACGTTTCAGAACATCCGCCTTTCGCAACACATGAC CGTGCTTGAAAATATCATGGTGGGCTGTCATGTGCGGCGTCACTGCCCCTGGTGGATGGCGCCGCTCGGTCTGCCGTCTT TTTACCGTGAAGAAGCCGAAATCAGGGAAAAAAGCCGCAAGCTGGCGGAACGGGTAAATCTTGGCGAGCATCTCGATGAC CTGGCCGGCAGCCTGCCTTACGGCGCGCAGCGCCGGCTTGAGATTGCCCGTGCTCTGGCTACCGAACCCCGGCTGCTTTT GCTGGACGAGCCTGCTGCAGGGATGAACCCCCAGGAAAGCATTGAGCTTATGCATTTCATTGGTCATATCCGCGACGAAT TTGATCTGACCATCCTGCTCATCGAGCATGACATGAAAGTTGTCATGGGCGTATGCCAGTACATCTGGGTTATGGAGTAC GGCGCGCTCATCGCTGAAGGCGGGCCGGAGGATATTCGTAATAATCCCGTAGTAATCCGCGCCTACCTTGGTGAGGACAT GGGCGCTGGCGGCATGTTTTGA
Upstream 100 bases:
>100_bases TGGTTCTGCTGGCCATTATCCTGTACCGGCGTGAAGGCATCATGGGCACGAGGGAACTGACCTGGAAGAGAATTGGCGCA TTTCTGAGGAGGCACAAGGC
Downstream 100 bases:
>100_bases TGCGTGATCGCATTATAGCCGTAACGGCTGAAGATATAATGGATATGGTGCAGCATGCTTGAAATTCGTGACCTTCATGT ACGCTACGGCGGCATTCAGG
Product: ABC transporter-like protein
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 273; Mature: 272
Protein sequence:
>273_residues MSEFILPSPPHYEGALLLARDVTMRFGGVTAVSELSLALPKGSIAGIIGPNGAGKTTAFNVLSGFYTPQGGDVIFDGQSI KGRKPYDICRQGMARTFQNIRLSQHMTVLENIMVGCHVRRHCPWWMAPLGLPSFYREEAEIREKSRKLAERVNLGEHLDD LAGSLPYGAQRRLEIARALATEPRLLLLDEPAAGMNPQESIELMHFIGHIRDEFDLTILLIEHDMKVVMGVCQYIWVMEY GALIAEGGPEDIRNNPVVIRAYLGEDMGAGGMF
Sequences:
>Translated_273_residues MSEFILPSPPHYEGALLLARDVTMRFGGVTAVSELSLALPKGSIAGIIGPNGAGKTTAFNVLSGFYTPQGGDVIFDGQSI KGRKPYDICRQGMARTFQNIRLSQHMTVLENIMVGCHVRRHCPWWMAPLGLPSFYREEAEIREKSRKLAERVNLGEHLDD LAGSLPYGAQRRLEIARALATEPRLLLLDEPAAGMNPQESIELMHFIGHIRDEFDLTILLIEHDMKVVMGVCQYIWVMEY GALIAEGGPEDIRNNPVVIRAYLGEDMGAGGMF >Mature_272_residues SEFILPSPPHYEGALLLARDVTMRFGGVTAVSELSLALPKGSIAGIIGPNGAGKTTAFNVLSGFYTPQGGDVIFDGQSIK GRKPYDICRQGMARTFQNIRLSQHMTVLENIMVGCHVRRHCPWWMAPLGLPSFYREEAEIREKSRKLAERVNLGEHLDDL AGSLPYGAQRRLEIARALATEPRLLLLDEPAAGMNPQESIELMHFIGHIRDEFDLTILLIEHDMKVVMGVCQYIWVMEYG ALIAEGGPEDIRNNPVVIRAYLGEDMGAGGMF
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0411
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI31657092, Length=239, Percent_Identity=29.2887029288703, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI27881501, Length=237, Percent_Identity=27.4261603375527, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI30795238, Length=237, Percent_Identity=27.4261603375527, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI105990541, Length=225, Percent_Identity=28.8888888888889, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI150417984, Length=243, Percent_Identity=26.3374485596708, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI27262624, Length=242, Percent_Identity=25.6198347107438, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI27262626, Length=242, Percent_Identity=25.6198347107438, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI45446740, Length=235, Percent_Identity=26.8085106382979, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI47078218, Length=235, Percent_Identity=26.8085106382979, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI116734710, Length=227, Percent_Identity=29.0748898678414, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI153792144, Length=225, Percent_Identity=25.3333333333333, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI21536376, Length=233, Percent_Identity=27.8969957081545, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI171184400, Length=228, Percent_Identity=24.5614035087719, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI27436953, Length=227, Percent_Identity=25.9911894273128, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI156105685, Length=227, Percent_Identity=28.6343612334802, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI27477115, Length=228, Percent_Identity=25, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI148612844, Length=221, Percent_Identity=27.1493212669683, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI255708477, Length=221, Percent_Identity=27.1493212669683, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI21536378, Length=220, Percent_Identity=24.0909090909091, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1789864, Length=250, Percent_Identity=48.8, Blast_Score=244, Evalue=5e-66, Organism=Escherichia coli, GI1789593, Length=255, Percent_Identity=34.5098039215686, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI87081709, Length=256, Percent_Identity=28.515625, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI1788761, Length=249, Percent_Identity=28.9156626506024, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1787029, Length=238, Percent_Identity=28.5714285714286, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1786398, Length=230, Percent_Identity=29.5652173913043, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1789991, Length=243, Percent_Identity=32.5102880658436, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI48994943, Length=249, Percent_Identity=30.5220883534137, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI87081791, Length=258, Percent_Identity=29.0697674418605, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI87082268, Length=253, Percent_Identity=30.0395256916996, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1786345, Length=233, Percent_Identity=30.0429184549356, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1790190, Length=232, Percent_Identity=29.3103448275862, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1789032, Length=228, Percent_Identity=30.2631578947368, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786803, Length=248, Percent_Identity=26.6129032258064, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1790525, Length=242, Percent_Identity=26.4462809917355, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1786872, Length=248, Percent_Identity=25.4032258064516, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1789672, Length=256, Percent_Identity=25, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1788225, Length=244, Percent_Identity=28.6885245901639, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI87081782, Length=237, Percent_Identity=29.957805907173, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787089, Length=227, Percent_Identity=27.7533039647577, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1788450, Length=245, Percent_Identity=27.7551020408163, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI48994997, Length=244, Percent_Identity=25.8196721311475, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789586, Length=239, Percent_Identity=28.4518828451883, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI48994883, Length=255, Percent_Identity=26.2745098039216, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1788644, Length=252, Percent_Identity=28.5714285714286, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787712, Length=236, Percent_Identity=25.8474576271186, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1787370, Length=242, Percent_Identity=26.0330578512397, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1790739, Length=240, Percent_Identity=29.1666666666667, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1788210, Length=251, Percent_Identity=27.4900398406374, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1786253, Length=229, Percent_Identity=26.6375545851528, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1790467, Length=237, Percent_Identity=24.8945147679325, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790544, Length=237, Percent_Identity=25.7383966244726, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789962, Length=229, Percent_Identity=24.4541484716157, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=25.5707762557078, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI87081834, Length=215, Percent_Identity=26.046511627907, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87082267, Length=236, Percent_Identity=25.8474576271186, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788472, Length=239, Percent_Identity=22.5941422594142, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787500, Length=237, Percent_Identity=26.1603375527426, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787164, Length=231, Percent_Identity=25.1082251082251, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786319, Length=218, Percent_Identity=29.3577981651376, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788506, Length=222, Percent_Identity=27.4774774774775, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787758, Length=260, Percent_Identity=25, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1788897, Length=245, Percent_Identity=23.6734693877551, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787759, Length=234, Percent_Identity=24.3589743589744, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790162, Length=247, Percent_Identity=25.1012145748988, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787792, Length=243, Percent_Identity=23.4567901234568, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786563, Length=203, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786703, Length=209, Percent_Identity=24.4019138755981, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787041, Length=252, Percent_Identity=25.7936507936508, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789891, Length=214, Percent_Identity=23.8317757009346, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI145693107, Length=235, Percent_Identity=26.8085106382979, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1788540, Length=210, Percent_Identity=27.1428571428571, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI2367384, Length=272, Percent_Identity=26.1029411764706, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1786981, Length=225, Percent_Identity=28, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789873, Length=208, Percent_Identity=25, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787105, Length=206, Percent_Identity=25.7281553398058, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786654, Length=224, Percent_Identity=22.7678571428571, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786698, Length=209, Percent_Identity=24.4019138755981, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787143, Length=242, Percent_Identity=24.3801652892562, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1789963, Length=258, Percent_Identity=23.2558139534884, Blast_Score=61, Evalue=1e-10, Organism=Caenorhabditis elegans, GI71983523, Length=242, Percent_Identity=27.6859504132231, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI71983510, Length=242, Percent_Identity=27.6859504132231, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI71983516, Length=242, Percent_Identity=27.6859504132231, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17510237, Length=230, Percent_Identity=25.2173913043478, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17565586, Length=219, Percent_Identity=29.2237442922374, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI115533608, Length=204, Percent_Identity=29.9019607843137, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17541710, Length=215, Percent_Identity=24.6511627906977, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17565938, Length=236, Percent_Identity=24.5762711864407, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567265, Length=168, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17543740, Length=229, Percent_Identity=25.764192139738, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115535101, Length=171, Percent_Identity=30.4093567251462, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24643674, Length=239, Percent_Identity=27.6150627615063, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24666092, Length=211, Percent_Identity=28.436018957346, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI221512771, Length=243, Percent_Identity=26.7489711934156, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI28573573, Length=247, Percent_Identity=26.3157894736842, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI28573571, Length=247, Percent_Identity=26.3157894736842, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI28574744, Length=220, Percent_Identity=25.9090909090909, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI28574533, Length=215, Percent_Identity=25.1162790697674, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24582014, Length=225, Percent_Identity=27.5555555555556, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24582012, Length=225, Percent_Identity=27.5555555555556, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI23397593, Length=230, Percent_Identity=24.7826086956522, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24650855, Length=220, Percent_Identity=25.9090909090909, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI24650853, Length=220, Percent_Identity=25.9090909090909, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 30223; Mature: 30092
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEFILPSPPHYEGALLLARDVTMRFGGVTAVSELSLALPKGSIAGIIGPNGAGKTTAFN CCCCCCCCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH VLSGFYTPQGGDVIFDGQSIKGRKPYDICRQGMARTFQNIRLSQHMTVLENIMVGCHVRR HHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HCPWWMAPLGLPSFYREEAEIREKSRKLAERVNLGEHLDDLAGSLPYGAQRRLEIARALA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHH TEPRLLLLDEPAAGMNPQESIELMHFIGHIRDEFDLTILLIEHDMKVVMGVCQYIWVMEY CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHH GALIAEGGPEDIRNNPVVIRAYLGEDMGAGGMF HHHHCCCCHHHHCCCCEEEEEECCCCCCCCCCC >Mature Secondary Structure SEFILPSPPHYEGALLLARDVTMRFGGVTAVSELSLALPKGSIAGIIGPNGAGKTTAFN CCCCCCCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH VLSGFYTPQGGDVIFDGQSIKGRKPYDICRQGMARTFQNIRLSQHMTVLENIMVGCHVRR HHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HCPWWMAPLGLPSFYREEAEIREKSRKLAERVNLGEHLDDLAGSLPYGAQRRLEIARALA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHH TEPRLLLLDEPAAGMNPQESIELMHFIGHIRDEFDLTILLIEHDMKVVMGVCQYIWVMEY CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHH GALIAEGGPEDIRNNPVVIRAYLGEDMGAGGMF HHHHCCCCHHHHCCCCEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]