Click here to switch to the map view.

The map label for this gene is ybhN [C]

Identifier: 220904318

GI number: 220904318

Start: 1225333

End: 1226886

Strand: Direct

Name: ybhN [C]

Synonym: Ddes_1045

Alternate gene names: 220904318

Gene position: 1225333-1226886 (Clockwise)

Preceding gene: 220904316

Following gene: 220904322

Centisome position: 42.64

GC content: 55.47

Gene sequence:

>1554_bases
ATGAAAAAATATTTGCGTTATCTCGGGCCATTACTGATCTCTGCCATTTTTCTGCTGGCAGTGTATCTTTTGTACCATAA
ACTGAAAAGCTACAGTGTCGCGCAAATTCGCGAAAGTCTTTCGCAGATATCCCACACACGTATCACCCTTTCACTCCTGC
TCATGGTGGTCAATTATATGATCCTTGTGGGCTATGACTGGCTTGCGCTCAAGGCCATCCATAAAAGCCTTCCCTTGCCG
CGTGTGGGGCTGGTTTCTTTTGTGGGGCAGGCCGTAAGCTATAACTTTGGCGCGCTGCTCGGCGGCACAAGCGTACGCTA
CCGCTTTTACTCAGCCTGGGGGTTTTCGCTGACAGACATAGTGCGGCTTGTGCTTATGCTGGCGGTTACCTTCTGGGTGG
GAGCACTTGGACTGTGCGGAGCCATCTTTATGGTGGCGCCCCCCATTATTCCTGACGAGCTGCTGGTCAAGATGCCACTC
AAAGACGTGCGCATCCTGGGCGCCATTCTTTTTGCCATCGCCTGCTCATACCTTGCCCTGTGCTTTTTTATTCGCAAGCC
CGTGCATATGTTCGGCAAGGAATTCGTTTTTCCCCCGCCGCGCATAGCCATTGCCCAGGCCCTTGTGGCGGGCGTGGACA
TCGTGGCCGCGGCGGCCTGCATGTATGTGTTGCTGCCGGGCGATATGGGCATAAGCTTTATCGATTTTCTGCCAAGCTAC
CTTATGGCCCAGGTGGCCGTGGTATTGACGCATATTCCCGGCGGGGTCGGAGTGTTTGAGCTTGTCATCCTGCACCTTAC
CCACACTACGCACGAGCAGATGGTTTTTGCCGCGGTGCTCTTGTTCCGGTTGATTTATTTTATTATTCCGCTGCTGGCCG
CGGCGCTTTTGCTTGCACTCTATGAAGTGCGCCAGCGCCGTCAGGTTCTGCGCGGGGCCGGGCGATGGCTTTCTGTGCTT
TCACATACCATTTCGGCCTATATGTGTTTTTCTGCCGGGATTATTTTGCTGGTTTCATCCACATTGCCCTTGGGCCATCA
CGCCCTCAGCATGCTGCGGATTATGGAACCCTACCATGTGACGGCTATAGGGCATTTTGTGAGCTGCCTGTCGGGCGCGG
CCTTGCTTTTTGTTTCTTACGGGCTGGAACGACGGCAGACACGGGCTTTTTATATGGCTGTGTTTTTTCTCTGTCTCGGC
ATTGCCGGGGCCTTGCTCAACGGCTTTTCCTGGCTCACGGCAGGCATGGTGAGCGTGGTGCTTTTGGCCGTATGCATGGC
CCGCAGGCGGTTTTATCGTGCTTCATTTTTCTGGCAGGAGCCTATCCCCCTGTTCTGGCTGGGGGGGGCCATGGGGGTGC
TTGTGCTGGTAGGCGCGTTGGGCTGGACGCTGTACCACACGGCATGGAGCCATTCTGCCAACTGGTGGGGCAACGCTGCC
CCCAACGCGGCGCGTACAACGTATGCTTTTGCAGGCATTGCCGTGGGCTTGGTACTTTCGTGGATATGGCGGGCGTCTCT
TCGGCGGCGTGCGCGTCACAGGCAAGAAAATTAG

Upstream 100 bases:

>100_bases
GCGTACAGTTGGCACTTGCGCCGTGCTGGTGCAGCGTATATGGTAAAAAAATTGTTATAAACCGAGCTGATCGTCAGCCG
CATTCAAACAACGGCAGCTT

Downstream 100 bases:

>100_bases
CGGCGTTTGCTATAAAAAAGCCCGCGGTATACCGCGGGCTTTTTTGTATGTATTGTAGTCGAAATAGCCGGCGCGCATCG
CGCAGCCGCTCTCTGCCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 517

Protein sequence:

>517_residues
MKKYLRYLGPLLISAIFLLAVYLLYHKLKSYSVAQIRESLSQISHTRITLSLLLMVVNYMILVGYDWLALKAIHKSLPLP
RVGLVSFVGQAVSYNFGALLGGTSVRYRFYSAWGFSLTDIVRLVLMLAVTFWVGALGLCGAIFMVAPPIIPDELLVKMPL
KDVRILGAILFAIACSYLALCFFIRKPVHMFGKEFVFPPPRIAIAQALVAGVDIVAAAACMYVLLPGDMGISFIDFLPSY
LMAQVAVVLTHIPGGVGVFELVILHLTHTTHEQMVFAAVLLFRLIYFIIPLLAAALLLALYEVRQRRQVLRGAGRWLSVL
SHTISAYMCFSAGIILLVSSTLPLGHHALSMLRIMEPYHVTAIGHFVSCLSGAALLFVSYGLERRQTRAFYMAVFFLCLG
IAGALLNGFSWLTAGMVSVVLLAVCMARRRFYRASFFWQEPIPLFWLGGAMGVLVLVGALGWTLYHTAWSHSANWWGNAA
PNAARTTYAFAGIAVGLVLSWIWRASLRRRARHRQEN

Sequences:

>Translated_517_residues
MKKYLRYLGPLLISAIFLLAVYLLYHKLKSYSVAQIRESLSQISHTRITLSLLLMVVNYMILVGYDWLALKAIHKSLPLP
RVGLVSFVGQAVSYNFGALLGGTSVRYRFYSAWGFSLTDIVRLVLMLAVTFWVGALGLCGAIFMVAPPIIPDELLVKMPL
KDVRILGAILFAIACSYLALCFFIRKPVHMFGKEFVFPPPRIAIAQALVAGVDIVAAAACMYVLLPGDMGISFIDFLPSY
LMAQVAVVLTHIPGGVGVFELVILHLTHTTHEQMVFAAVLLFRLIYFIIPLLAAALLLALYEVRQRRQVLRGAGRWLSVL
SHTISAYMCFSAGIILLVSSTLPLGHHALSMLRIMEPYHVTAIGHFVSCLSGAALLFVSYGLERRQTRAFYMAVFFLCLG
IAGALLNGFSWLTAGMVSVVLLAVCMARRRFYRASFFWQEPIPLFWLGGAMGVLVLVGALGWTLYHTAWSHSANWWGNAA
PNAARTTYAFAGIAVGLVLSWIWRASLRRRARHRQEN
>Mature_517_residues
MKKYLRYLGPLLISAIFLLAVYLLYHKLKSYSVAQIRESLSQISHTRITLSLLLMVVNYMILVGYDWLALKAIHKSLPLP
RVGLVSFVGQAVSYNFGALLGGTSVRYRFYSAWGFSLTDIVRLVLMLAVTFWVGALGLCGAIFMVAPPIIPDELLVKMPL
KDVRILGAILFAIACSYLALCFFIRKPVHMFGKEFVFPPPRIAIAQALVAGVDIVAAAACMYVLLPGDMGISFIDFLPSY
LMAQVAVVLTHIPGGVGVFELVILHLTHTTHEQMVFAAVLLFRLIYFIIPLLAAALLLALYEVRQRRQVLRGAGRWLSVL
SHTISAYMCFSAGIILLVSSTLPLGHHALSMLRIMEPYHVTAIGHFVSCLSGAALLFVSYGLERRQTRAFYMAVFFLCLG
IAGALLNGFSWLTAGMVSVVLLAVCMARRRFYRASFFWQEPIPLFWLGGAMGVLVLVGALGWTLYHTAWSHSANWWGNAA
PNAARTTYAFAGIAVGLVLSWIWRASLRRRARHRQEN

Specific function: Unknown

COG id: COG0392

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybhN [H]

Homologues:

Organism=Escherichia coli, GI1787006, Length=309, Percent_Identity=30.7443365695793, Blast_Score=109, Evalue=4e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022791 [H]

Pfam domain/function: PF03706 UPF0104 [H]

EC number: NA

Molecular weight: Translated: 57355; Mature: 57355

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]