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The map label for this gene is yvyD [H]

Identifier: 220904246

GI number: 220904246

Start: 1133510

End: 1134049

Strand: Reverse

Name: yvyD [H]

Synonym: Ddes_0973

Alternate gene names: 220904246

Gene position: 1134049-1133510 (Counterclockwise)

Preceding gene: 220904247

Following gene: 220904245

Centisome position: 39.47

GC content: 56.11

Gene sequence:

>540_bases
ATGAATATCTCTTTTGCCTTCAAAAACTTTGAAGCCTCCGACCATCTTAAAAAATATGCCCGCCGCCGCATGGAAAAGCT
GGGGCGTTTTTTCGGCAAGTCCGCCGGTCTTGAAGTTACCGTCGTGCTGACCGTAGATAAATTCCGCCACCGCTGCGAAG
TAACCGTTGTGGGGGAAGGACTGCACATCAACGCCACGGAACAGACCACGGACATGTACGCCGCCATCGACCTTGTGACA
GACAAGGTCGAAGCGCAGATCAAGCGTCAGGTTTCACGGGTCAAAACCCAGCGCCGCAAGGCGCGCAGCGCCGATGTCGA
TGTGTTCACCTACAACATCGAGGCAGAAGCCGAGGCCCCGCAACCGGTGGAAGGCACTGACCGCCTGGCGGCCAAGCCCC
TGCACCTTGACGAGGCGCTCATGCAGCTTGATTCTATCGGCAGCGAATTCCTGGTCTTTTTCAACGCTGAAAACGGCCGC
ATCAACGTCGTATACCGCACACGCACAAGCGGCTACGCGCTGATCGACCCTGTTTTATAA

Upstream 100 bases:

>100_bases
ATTGCGAAAAAGGGCCGTAAACCGCCACTGCTTCGCTGCCCGCCCAAGGGCGGGACCTCGCGGTTGCCATGCCGGAAACC
GCCATCAAAAGGAGGATTAT

Downstream 100 bases:

>100_bases
CACGCCTGTTCCGGGCCGCCCCAAGAACGCCGTTGCGGGGGCGGCCCGGAAATTTCAGGGGGATTCATGAGCACCGCCAC
ACACCCGCGGCCCGAAGGGC

Product: sigma 54 modulation protein/30S ribosomal protein S30EA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MNISFAFKNFEASDHLKKYARRRMEKLGRFFGKSAGLEVTVVLTVDKFRHRCEVTVVGEGLHINATEQTTDMYAAIDLVT
DKVEAQIKRQVSRVKTQRRKARSADVDVFTYNIEAEAEAPQPVEGTDRLAAKPLHLDEALMQLDSIGSEFLVFFNAENGR
INVVYRTRTSGYALIDPVL

Sequences:

>Translated_179_residues
MNISFAFKNFEASDHLKKYARRRMEKLGRFFGKSAGLEVTVVLTVDKFRHRCEVTVVGEGLHINATEQTTDMYAAIDLVT
DKVEAQIKRQVSRVKTQRRKARSADVDVFTYNIEAEAEAPQPVEGTDRLAAKPLHLDEALMQLDSIGSEFLVFFNAENGR
INVVYRTRTSGYALIDPVL
>Mature_179_residues
MNISFAFKNFEASDHLKKYARRRMEKLGRFFGKSAGLEVTVVLTVDKFRHRCEVTVVGEGLHINATEQTTDMYAAIDLVT
DKVEAQIKRQVSRVKTQRRKARSADVDVFTYNIEAEAEAPQPVEGTDRLAAKPLHLDEALMQLDSIGSEFLVFFNAENGR
INVVYRTRTSGYALIDPVL

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 20241; Mature: 20241

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISFAFKNFEASDHLKKYARRRMEKLGRFFGKSAGLEVTVVLTVDKFRHRCEVTVVGEG
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHCEEEEEEEECC
LHINATEQTTDMYAAIDLVTDKVEAQIKRQVSRVKTQRRKARSADVDVFTYNIEAEAEAP
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC
QPVEGTDRLAAKPLHLDEALMQLDSIGSEFLVFFNAENGRINVVYRTRTSGYALIDPVL
CCCCCCCHHHCCCCCHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCCCEEEECCCC
>Mature Secondary Structure
MNISFAFKNFEASDHLKKYARRRMEKLGRFFGKSAGLEVTVVLTVDKFRHRCEVTVVGEG
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHCEEEEEEEECC
LHINATEQTTDMYAAIDLVTDKVEAQIKRQVSRVKTQRRKARSADVDVFTYNIEAEAEAP
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC
QPVEGTDRLAAKPLHLDEALMQLDSIGSEFLVFFNAENGRINVVYRTRTSGYALIDPVL
CCCCCCCHHHCCCCCHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8195064; 9384377; 1901557 [H]