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The map label for this gene is yebA [H]

Identifier: 220904226

GI number: 220904226

Start: 1110979

End: 1111989

Strand: Direct

Name: yebA [H]

Synonym: Ddes_0953

Alternate gene names: 220904226

Gene position: 1110979-1111989 (Clockwise)

Preceding gene: 220904225

Following gene: 220904227

Centisome position: 38.66

GC content: 60.04

Gene sequence:

>1011_bases
GTGAAAAATATCTTCTATATACATCTTGCGTACAGGGCTTTTGCCGCACTGCTGCCTGTGCTGCTTGCATTGGTGGTTTT
TTCCGGCGGCCCGGCTCTGGCTGCTCCGCAGATAAGCCTTGAGGCCCCTGCCACAGTAGCCAGAGGCGACGCCTTTTTGG
CTCTGGCCCTCAGCAGTGAGGCTGTTCCGGCATTCAGCTTCAGTTGGATGGGGAAAAAGCACACGGTTACGGCATTGCCT
GTAGCGTCTGCCCCCGGTGCGGCACAACGCTGGCAGGCCGTTATTCTTCTGCCCGTGCCTCTGGACGCCAGGGAAAGTGA
CCTCACCCTTGGGGTGAGCCTTGCAACAGGGCAGGGCGGTGGTAAAAAATCCGGCGTTGCCGCGCAGGTTGTCACACAAG
GCATCAGCCTTTATGACAAAGACCGCCCGGTCCAGAAGCTCACGGTGGACAAAAAATACGTTAACCCGCCTGCGGCACAG
ATGGAGCGCATCAAGGCCGACAGGGAGCTTGTGCGCAAGACCCTTGCGGAGTATACGCCCGAGCGTCTGTGGACGCTGCC
GTTCGACAGGCCCGTTCCCGGCGGCGTTTCGAGCCTTTTTGGCCTGAAGCGCGTGTTTAACGGCCAGCCGCGCGGCCTGC
ACCGGGGGCTGGACCTGCGGGGCACTGAAGGCACACCCATAGTTGCCTGCGCCGATGGCAGGGTAGCCCTGACCGGGGAT
TTGTACTTCTCGGGCAATGTGGTGTACATCAATCACGGCGAAGGGGTTTTCACTGCCTATCTGCACATGTCAAAAATTCT
GGTCGCGCAGGGCCAGCCTGTACGCAAGGGCGAGGTCATCGGCCTGGTAGGGGCCACTGGCCGCGTTACCGGGCCGCATT
TGCATCTTTCTTTGCTGGTACAGGGTGTGTCTGTTGACCCACAGCCTTTTCTGGCTGTAAAACCCGCCGCAGATGCAGCG
CCCCCGGCTGCTTCGGGCATGGCTGCGCAAGACGCCAAAACAGGAAAGTAG

Upstream 100 bases:

>100_bases
CGCCCCCCGGTACGGAAATTCAGGTGCGCCTGGCTGACGGCAGCCTGGCAGCCGTGGTCGGCAGCGTGAACCACGCCGGA
CGCGGAAAAAGGAAAAAAAC

Downstream 100 bases:

>100_bases
ACTGCATGAGCGCCAAAAACGACAATCTTTTTGAAAAAAAACTGGCCCGGCTTCAGGAAATCGTCGGCGCGCTGGAGTCC
GGCGACCTGCCGCTTGAAAA

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MKNIFYIHLAYRAFAALLPVLLALVVFSGGPALAAPQISLEAPATVARGDAFLALALSSEAVPAFSFSWMGKKHTVTALP
VASAPGAAQRWQAVILLPVPLDARESDLTLGVSLATGQGGGKKSGVAAQVVTQGISLYDKDRPVQKLTVDKKYVNPPAAQ
MERIKADRELVRKTLAEYTPERLWTLPFDRPVPGGVSSLFGLKRVFNGQPRGLHRGLDLRGTEGTPIVACADGRVALTGD
LYFSGNVVYINHGEGVFTAYLHMSKILVAQGQPVRKGEVIGLVGATGRVTGPHLHLSLLVQGVSVDPQPFLAVKPAADAA
PPAASGMAAQDAKTGK

Sequences:

>Translated_336_residues
MKNIFYIHLAYRAFAALLPVLLALVVFSGGPALAAPQISLEAPATVARGDAFLALALSSEAVPAFSFSWMGKKHTVTALP
VASAPGAAQRWQAVILLPVPLDARESDLTLGVSLATGQGGGKKSGVAAQVVTQGISLYDKDRPVQKLTVDKKYVNPPAAQ
MERIKADRELVRKTLAEYTPERLWTLPFDRPVPGGVSSLFGLKRVFNGQPRGLHRGLDLRGTEGTPIVACADGRVALTGD
LYFSGNVVYINHGEGVFTAYLHMSKILVAQGQPVRKGEVIGLVGATGRVTGPHLHLSLLVQGVSVDPQPFLAVKPAADAA
PPAASGMAAQDAKTGK
>Mature_336_residues
MKNIFYIHLAYRAFAALLPVLLALVVFSGGPALAAPQISLEAPATVARGDAFLALALSSEAVPAFSFSWMGKKHTVTALP
VASAPGAAQRWQAVILLPVPLDARESDLTLGVSLATGQGGGKKSGVAAQVVTQGISLYDKDRPVQKLTVDKKYVNPPAAQ
MERIKADRELVRKTLAEYTPERLWTLPFDRPVPGGVSSLFGLKRVFNGQPRGLHRGLDLRGTEGTPIVACADGRVALTGD
LYFSGNVVYINHGEGVFTAYLHMSKILVAQGQPVRKGEVIGLVGATGRVTGPHLHLSLLVQGVSVDPQPFLAVKPAADAA
PPAASGMAAQDAKTGK

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=94, Percent_Identity=42.5531914893617, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1789099, Length=122, Percent_Identity=34.4262295081967, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082297, Length=97, Percent_Identity=40.2061855670103, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082174, Length=101, Percent_Identity=34.6534653465347, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 35307; Mature: 35307

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIFYIHLAYRAFAALLPVLLALVVFSGGPALAAPQISLEAPATVARGDAFLALALSSE
CCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEECCCEEEEEEECCC
AVPAFSFSWMGKKHTVTALPVASAPGAAQRWQAVILLPVPLDARESDLTLGVSLATGQGG
CCCCEEEECCCCCCEEEEEECCCCCCHHHCCEEEEEEECCCCCCCCCEEEEEEEEECCCC
GKKSGVAAQVVTQGISLYDKDRPVQKLTVDKKYVNPPAAQMERIKADRELVRKTLAEYTP
CCCCCHHHHHHHHCCHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
ERLWTLPFDRPVPGGVSSLFGLKRVFNGQPRGLHRGLDLRGTEGTPIVACADGRVALTGD
CCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCEEEEECCCCEEEEEE
LYFSGNVVYINHGEGVFTAYLHMSKILVAQGQPVRKGEVIGLVGATGRVTGPHLHLSLLV
EEEECEEEEEECCCCEEEHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCEEEEEEEE
QGVSVDPQPFLAVKPAADAAPPAASGMAAQDAKTGK
ECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNIFYIHLAYRAFAALLPVLLALVVFSGGPALAAPQISLEAPATVARGDAFLALALSSE
CCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEECCCEEEEEEECCC
AVPAFSFSWMGKKHTVTALPVASAPGAAQRWQAVILLPVPLDARESDLTLGVSLATGQGG
CCCCEEEECCCCCCEEEEEECCCCCCHHHCCEEEEEEECCCCCCCCCEEEEEEEEECCCC
GKKSGVAAQVVTQGISLYDKDRPVQKLTVDKKYVNPPAAQMERIKADRELVRKTLAEYTP
CCCCCHHHHHHHHCCHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
ERLWTLPFDRPVPGGVSSLFGLKRVFNGQPRGLHRGLDLRGTEGTPIVACADGRVALTGD
CCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCEEEEECCCCEEEEEE
LYFSGNVVYINHGEGVFTAYLHMSKILVAQGQPVRKGEVIGLVGATGRVTGPHLHLSLLV
EEEECEEEEEECCCCEEEHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCEEEEEEEE
QGVSVDPQPFLAVKPAADAAPPAASGMAAQDAKTGK
ECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]