Click here to switch to the map view.

The map label for this gene is dcrA [H]

Identifier: 220904095

GI number: 220904095

Start: 960898

End: 962988

Strand: Direct

Name: dcrA [H]

Synonym: Ddes_0821

Alternate gene names: 220904095

Gene position: 960898-962988 (Clockwise)

Preceding gene: 220904091

Following gene: 220904104

Centisome position: 33.44

GC content: 57.01

Gene sequence:

>2091_bases
ATGACCATCAAGGTGCGGGTGATACTTGGTTTCTTGCTGACGATAGCCATCATGGCCGGTGGAACCATACCCTATGTGAC
AAGTAAGATGCGCAACACTGCCGAAGAGTCGTATCTGACGGCCTCTGGAGAGCAATTACAGCTCATGGGCAGCTATGTAG
AAGGTTTTATTAACGAAGCAGAACGTAATCTTGCCTTTCTGGCTGCGGATGAACTGCTCATAGACGGGGAAAACACGTTT
CCCAACTATAAAAACACGTCCACCGAAAATGCCTATAAACGTTCGGCCCTGGCCCCGGAAGCGGCCCGCGCCGGTCAGCC
CCTTTTCAGGCTGGCCAAGGCAAATCCGTCCTATGTTGAAGTGTATGTGGGCTATCCTGATGGCAGCTATGGTTCATCCA
TGGCCGACGGTCCCGTTCCTGCGGGTTTTGATACCTCCAGGCGCGCCTGGTATGTGAGCCGCATGAATTCTGGCAAGGCC
GTTGGGCTGTCAGACAGTTATCTTTCCATTTCCGGCGAACTGGTGGCTCCCGTCACGCACAGCCTGCGCGATCGCAATGG
TGTTTTTCGCGGGGTGCTGGGCGTTGATGTTTCCCTTAACGGACTTTCGGAAAAATTCGAGGCCATGAATTTCGGCAGGA
CAGGCTATTTCCTGCTTGTGGAAAACACGGGTCGCATCATCTGTGACCCCAAGGACAAGGAACTTACCGGTAAAATCATC
GGCAAGGACATCCAGAGCCCCGGACTGGAGCATCTGTTCAAAACCCAGTCAGGCATTGTGCTTACCCGCATAAAGGACAT
ACCGGTGCGGGCCAACGTGCTCACAACCAGCCTTGGCTGGAAGATCGCCGTTATTCAGGACGAAAGTGAAATTTTTGCAG
AGACCAACGAGGCCATACGCTCTGTTTCTATTATTTACGCTGTCATCGCCCTCGTCATGCTGGCGGTGGCCTGGTATATT
GTACGCTCCATCAACCGCCCGCTGCGGCTTATCGTGGAAGCCGCGGACAAGATCGCTCAGGGGAACCTTGAGGCACATCT
TGACGCGCGCGATTTTTACGGCGAACTGGCGGAGCTGCGCAATTCGCTTCTCAACATGGTCCACAACCTGCAAAACATGA
TTGAAACCGCCAATCAGAAGAGCGCCGAGGCCGAGGAACAGACCCAGCGCGCCCAGGCAGCCACGGAGCAGGCCGAATTT
GCCCGCCAGCAGGCAGAAAGCGCCCGGCGTGACGGCATGCTGGCGGCGGCCGGGCAGCTGGAGGAAGTGGTCACTATCAT
TTCTTCGGCATCCAACCAGCTTACGGCTCGCATCGGCCAGTCAAACCATATGTCTGCCGAGTCGGCGGCCCGCCTGAGCG
AGGCGGCCACAGCCATGAACGAGATGAACTCCACCGTGCGTGAGGTGGCGGGCAACGCTTCCCTGGCGTCGGGCATGTCT
GATGAAACCAGGGGTAATGCGGAAAACGGCGCGCAGATCGTGCGCCAGGCCCTGCAAAGCATTGATCAGGTACATAAGGT
TTCTCTGGTACTCAAGGAAGACATGAACCAGCTGAACGAGCACGCCCAGGCCATTAACCGCATTATGGGCGTCATCTCCG
ACATTGCGGACCAGACTAACCTGCTGGCGCTCAATGCGGCCATCGAGGCCGCCCGGGCCGGAGACGCCGGACGCGGCTTT
GCCGTGGTGGCCGATGAGGTGCGCAAGCTGGCGGAAAAAACTATGGCTTCCACCCAGGATGTGGGCAACGCCATCAATGC
CATTCAGGAAAGTACCGCCAAAAGTGTGAGTGGCATGGACAAGGCAGTGGAAGAAATTGAAACCGCCACAGGATTTGCCA
GCCAGTCCGGCGATGCCCTGCGCCAGATCGTCAGCAATGTGGAAACCACGGCAGACCAGGTGAGGGCCATTGCCACGGCC
AGTGAAGAGCAGTCCGCCGCCAGTGAGGAAATCAATCAGTCCATTGTGCAGGTCAATGATATGGCCGGGCAGACGGCCCA
GGCCATGAATGAGGCATCCAGCGCGGTAGAAGAACTGGCGCAGCAGGCCAACCGCCTGGGCGACCTTATTACCAGCATGA
AGCAGGCCTGA

Upstream 100 bases:

>100_bases
CAGTGAAGAGAGAGCAGTTGTAGAAAATGGCGAAAGCATACGGCAAAAAGGGACGCTGCCAGCCTGCCTGAAAGGAGCAC
AGGCAGAGGAGGAACTGTCT

Downstream 100 bases:

>100_bases
GCACCCGCGGCAACTGATATTGATCTGTTGCGGGCTTAAAGGTGCGGCTGCAGCTTGACTGCCTCACCGCCCGACAAGAC
ACTCCGGCTGCCCTGACCGT

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 696; Mature: 695

Protein sequence:

>696_residues
MTIKVRVILGFLLTIAIMAGGTIPYVTSKMRNTAEESYLTASGEQLQLMGSYVEGFINEAERNLAFLAADELLIDGENTF
PNYKNTSTENAYKRSALAPEAARAGQPLFRLAKANPSYVEVYVGYPDGSYGSSMADGPVPAGFDTSRRAWYVSRMNSGKA
VGLSDSYLSISGELVAPVTHSLRDRNGVFRGVLGVDVSLNGLSEKFEAMNFGRTGYFLLVENTGRIICDPKDKELTGKII
GKDIQSPGLEHLFKTQSGIVLTRIKDIPVRANVLTTSLGWKIAVIQDESEIFAETNEAIRSVSIIYAVIALVMLAVAWYI
VRSINRPLRLIVEAADKIAQGNLEAHLDARDFYGELAELRNSLLNMVHNLQNMIETANQKSAEAEEQTQRAQAATEQAEF
ARQQAESARRDGMLAAAGQLEEVVTIISSASNQLTARIGQSNHMSAESAARLSEAATAMNEMNSTVREVAGNASLASGMS
DETRGNAENGAQIVRQALQSIDQVHKVSLVLKEDMNQLNEHAQAINRIMGVISDIADQTNLLALNAAIEAARAGDAGRGF
AVVADEVRKLAEKTMASTQDVGNAINAIQESTAKSVSGMDKAVEEIETATGFASQSGDALRQIVSNVETTADQVRAIATA
SEEQSAASEEINQSIVQVNDMAGQTAQAMNEASSAVEELAQQANRLGDLITSMKQA

Sequences:

>Translated_696_residues
MTIKVRVILGFLLTIAIMAGGTIPYVTSKMRNTAEESYLTASGEQLQLMGSYVEGFINEAERNLAFLAADELLIDGENTF
PNYKNTSTENAYKRSALAPEAARAGQPLFRLAKANPSYVEVYVGYPDGSYGSSMADGPVPAGFDTSRRAWYVSRMNSGKA
VGLSDSYLSISGELVAPVTHSLRDRNGVFRGVLGVDVSLNGLSEKFEAMNFGRTGYFLLVENTGRIICDPKDKELTGKII
GKDIQSPGLEHLFKTQSGIVLTRIKDIPVRANVLTTSLGWKIAVIQDESEIFAETNEAIRSVSIIYAVIALVMLAVAWYI
VRSINRPLRLIVEAADKIAQGNLEAHLDARDFYGELAELRNSLLNMVHNLQNMIETANQKSAEAEEQTQRAQAATEQAEF
ARQQAESARRDGMLAAAGQLEEVVTIISSASNQLTARIGQSNHMSAESAARLSEAATAMNEMNSTVREVAGNASLASGMS
DETRGNAENGAQIVRQALQSIDQVHKVSLVLKEDMNQLNEHAQAINRIMGVISDIADQTNLLALNAAIEAARAGDAGRGF
AVVADEVRKLAEKTMASTQDVGNAINAIQESTAKSVSGMDKAVEEIETATGFASQSGDALRQIVSNVETTADQVRAIATA
SEEQSAASEEINQSIVQVNDMAGQTAQAMNEASSAVEELAQQANRLGDLITSMKQA
>Mature_695_residues
TIKVRVILGFLLTIAIMAGGTIPYVTSKMRNTAEESYLTASGEQLQLMGSYVEGFINEAERNLAFLAADELLIDGENTFP
NYKNTSTENAYKRSALAPEAARAGQPLFRLAKANPSYVEVYVGYPDGSYGSSMADGPVPAGFDTSRRAWYVSRMNSGKAV
GLSDSYLSISGELVAPVTHSLRDRNGVFRGVLGVDVSLNGLSEKFEAMNFGRTGYFLLVENTGRIICDPKDKELTGKIIG
KDIQSPGLEHLFKTQSGIVLTRIKDIPVRANVLTTSLGWKIAVIQDESEIFAETNEAIRSVSIIYAVIALVMLAVAWYIV
RSINRPLRLIVEAADKIAQGNLEAHLDARDFYGELAELRNSLLNMVHNLQNMIETANQKSAEAEEQTQRAQAATEQAEFA
RQQAESARRDGMLAAAGQLEEVVTIISSASNQLTARIGQSNHMSAESAARLSEAATAMNEMNSTVREVAGNASLASGMSD
ETRGNAENGAQIVRQALQSIDQVHKVSLVLKEDMNQLNEHAQAINRIMGVISDIADQTNLLALNAAIEAARAGDAGRGFA
VVADEVRKLAEKTMASTQDVGNAINAIQESTAKSVSGMDKAVEEIETATGFASQSGDALRQIVSNVETTADQVRAIATAS
EEQSAASEEINQSIVQVNDMAGQTAQAMNEASSAVEELAQQANRLGDLITSMKQA

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=384, Percent_Identity=31.25, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1788194, Length=393, Percent_Identity=28.7531806615776, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI2367378, Length=363, Percent_Identity=27.5482093663912, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI1788195, Length=352, Percent_Identity=27.8409090909091, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1789453, Length=270, Percent_Identity=25.5555555555556, Blast_Score=91, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 74774; Mature: 74643

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKVRVILGFLLTIAIMAGGTIPYVTSKMRNTAEESYLTASGEQLQLMGSYVEGFINEA
CEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ERNLAFLAADELLIDGENTFPNYKNTSTENAYKRSALAPEAARAGQPLFRLAKANPSYVE
HHCEEEEEECCEEECCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCHHHHHHCCCCCEEE
VYVGYPDGSYGSSMADGPVPAGFDTSRRAWYVSRMNSGKAVGLSDSYLSISGELVAPVTH
EEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCEEECCCCHHHHHH
SLRDRNGVFRGVLGVDVSLNGLSEKFEAMNFGRTGYFLLVENTGRIICDPKDKELTGKII
HHHHCCCCEEEEEECCEEECHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCCHHHHHHH
GKDIQSPGLEHLFKTQSGIVLTRIKDIPVRANVLTTSLGWKIAVIQDESEIFAETNEAIR
CCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCEEEECCCEEEEEEECCHHHHHHHHHHHH
SVSIIYAVIALVMLAVAWYIVRSINRPLRLIVEAADKIAQGNLEAHLDARDFYGELAELR
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHH
NSLLNMVHNLQNMIETANQKSAEAEEQTQRAQAATEQAEFARQQAESARRDGMLAAAGQL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
EEVVTIISSASNQLTARIGQSNHMSAESAARLSEAATAMNEMNSTVREVAGNASLASGMS
HHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC
DETRGNAENGAQIVRQALQSIDQVHKVSLVLKEDMNQLNEHAQAINRIMGVISDIADQTN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMASTQDVGNAINAIQESTAKSVSGMD
EEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAVEEIETATGFASQSGDALRQIVSNVETTADQVRAIATASEEQSAASEEINQSIVQVND
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
MAGQTAQAMNEASSAVEELAQQANRLGDLITSMKQA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIKVRVILGFLLTIAIMAGGTIPYVTSKMRNTAEESYLTASGEQLQLMGSYVEGFINEA
EEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ERNLAFLAADELLIDGENTFPNYKNTSTENAYKRSALAPEAARAGQPLFRLAKANPSYVE
HHCEEEEEECCEEECCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCHHHHHHCCCCCEEE
VYVGYPDGSYGSSMADGPVPAGFDTSRRAWYVSRMNSGKAVGLSDSYLSISGELVAPVTH
EEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCEEECCCCHHHHHH
SLRDRNGVFRGVLGVDVSLNGLSEKFEAMNFGRTGYFLLVENTGRIICDPKDKELTGKII
HHHHCCCCEEEEEECCEEECHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCCHHHHHHH
GKDIQSPGLEHLFKTQSGIVLTRIKDIPVRANVLTTSLGWKIAVIQDESEIFAETNEAIR
CCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCEEEECCCEEEEEEECCHHHHHHHHHHHH
SVSIIYAVIALVMLAVAWYIVRSINRPLRLIVEAADKIAQGNLEAHLDARDFYGELAELR
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHH
NSLLNMVHNLQNMIETANQKSAEAEEQTQRAQAATEQAEFARQQAESARRDGMLAAAGQL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
EEVVTIISSASNQLTARIGQSNHMSAESAARLSEAATAMNEMNSTVREVAGNASLASGMS
HHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC
DETRGNAENGAQIVRQALQSIDQVHKVSLVLKEDMNQLNEHAQAINRIMGVISDIADQTN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMASTQDVGNAINAIQESTAKSVSGMD
EEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAVEEIETATGFASQSGDALRQIVSNVETTADQVRAIATASEEQSAASEEINQSIVQVND
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
MAGQTAQAMNEASSAVEELAQQANRLGDLITSMKQA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]