Click here to switch to the map view.

The map label for this gene is hypD [H]

Identifier: 220904075

GI number: 220904075

Start: 937657

End: 938748

Strand: Reverse

Name: hypD [H]

Synonym: Ddes_0801

Alternate gene names: 220904075

Gene position: 938748-937657 (Counterclockwise)

Preceding gene: 220904076

Following gene: 220904074

Centisome position: 32.67

GC content: 64.1

Gene sequence:

>1092_bases
ATGCAACTGGAAAACGCCTTTCAGGACCCGCAGCTCTGCCATAGCCTGCTGGACCGTCTCAATCGCGCGCTGGACGGACG
TCCCATGCGATTTATGGAAGTATGCGGCACACATACGGTAGCCATCTTCCAAAGCGGCCTGCGTTCCCTGCTGCCTTCTG
CTGTGGCCCACCTTTCCGGGCCGGGCTGTCCCGTCTGCGTCACACATGACGCCGAAGTGGCCGCTTTTCTTGACCTGGCG
GGGCGTGACAGGGTTATTGTTGCCACCTTTGGCGACCTGCTGCGCGTACCCGGCCCCGACGGACGCAGCCTCAAGCACGC
CCAGGCCCAGGGTGCGCGGGTGGAAATTGTGTACTCGCCGCTGGACGCCCTGAGCCTGGCGGCTGAAAACCCCGGCGACA
CCGTGGTTTTTCTGGGCATAGGCTTTGAGACCACCGCTCCCACCGTGGCCGCCACCCTGCTGACAGCCCGCCAGCGCAGA
CTTGACAATTTCTGCGTGCTTTCCCTGCACAAGCTGGTTCCCCCCGCCTTGCGCGCCCTGCTGGACGACAGCCAGTGCGC
TGTGGAAGCCTTTTTGCTGCCCGGGCATGTGTCCACCATCCTCGGCCTGCAACCATATGATTTTCTGGCAAAGGACTATG
GCGTACCCGGCGTGGTGGGCGGCTTTCAGCCAGCCGACATTCTGCTGGCCCTGTGCATGATGGCCGAGCAGCTGCGCGAC
AAGACCCCGGCCGTGGTCAATGCCTATCCCCGCGCTGTGGACGACACGGGCAATCCGCGCGCCCGCGCCCTGCTGGAACA
GTTTTTCACTCCGGCAGACGCCCTGTGGCGCGGCATTGGCAGCATACCGCACAGCGGGCTGGTGCTGCGGGCCGAATACG
AGGATATGGACGCCATGAAGCGCCTTGGCCTCACGCTGCCGGACGTGCCGCCGCTGGCCGGATGCCGCTGCGGAGATGTG
CTCAAGGGCCGCATTACGCCCCCGGCCTGTCCGCTCTTCGGTAAAAAATGCACGCCCGCCACGCCGGTGGGACCATGCAT
GGTGTCCACCGAGGGCAGTTGTGCCGCCTACTTCAAATATTCGGAGCGATAA

Upstream 100 bases:

>100_bases
TGTGCGGAGGTATTATACAAAACGTCTGTCAGCGCAGCGGCACATTGCCCCGTAATCAGTTCCGGCCATAATTTTTTGGA
AGCACCACAAGAGGAGCATC

Downstream 100 bases:

>100_bases
TGGAAGACTGTCTTCTTCTGGATGCTGGCAGCGGTGGCAGGGCCTCACAGCGCCTGGTGGCCCAGTGCTTTTTTCGCCAT
TTTGCCAATCCCCTGCTGGA

Product: hydrogenase formation HypD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MQLENAFQDPQLCHSLLDRLNRALDGRPMRFMEVCGTHTVAIFQSGLRSLLPSAVAHLSGPGCPVCVTHDAEVAAFLDLA
GRDRVIVATFGDLLRVPGPDGRSLKHAQAQGARVEIVYSPLDALSLAAENPGDTVVFLGIGFETTAPTVAATLLTARQRR
LDNFCVLSLHKLVPPALRALLDDSQCAVEAFLLPGHVSTILGLQPYDFLAKDYGVPGVVGGFQPADILLALCMMAEQLRD
KTPAVVNAYPRAVDDTGNPRARALLEQFFTPADALWRGIGSIPHSGLVLRAEYEDMDAMKRLGLTLPDVPPLAGCRCGDV
LKGRITPPACPLFGKKCTPATPVGPCMVSTEGSCAAYFKYSER

Sequences:

>Translated_363_residues
MQLENAFQDPQLCHSLLDRLNRALDGRPMRFMEVCGTHTVAIFQSGLRSLLPSAVAHLSGPGCPVCVTHDAEVAAFLDLA
GRDRVIVATFGDLLRVPGPDGRSLKHAQAQGARVEIVYSPLDALSLAAENPGDTVVFLGIGFETTAPTVAATLLTARQRR
LDNFCVLSLHKLVPPALRALLDDSQCAVEAFLLPGHVSTILGLQPYDFLAKDYGVPGVVGGFQPADILLALCMMAEQLRD
KTPAVVNAYPRAVDDTGNPRARALLEQFFTPADALWRGIGSIPHSGLVLRAEYEDMDAMKRLGLTLPDVPPLAGCRCGDV
LKGRITPPACPLFGKKCTPATPVGPCMVSTEGSCAAYFKYSER
>Mature_363_residues
MQLENAFQDPQLCHSLLDRLNRALDGRPMRFMEVCGTHTVAIFQSGLRSLLPSAVAHLSGPGCPVCVTHDAEVAAFLDLA
GRDRVIVATFGDLLRVPGPDGRSLKHAQAQGARVEIVYSPLDALSLAAENPGDTVVFLGIGFETTAPTVAATLLTARQRR
LDNFCVLSLHKLVPPALRALLDDSQCAVEAFLLPGHVSTILGLQPYDFLAKDYGVPGVVGGFQPADILLALCMMAEQLRD
KTPAVVNAYPRAVDDTGNPRARALLEQFFTPADALWRGIGSIPHSGLVLRAEYEDMDAMKRLGLTLPDVPPLAGCRCGDV
LKGRITPPACPLFGKKCTPATPVGPCMVSTEGSCAAYFKYSER

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=370, Percent_Identity=42.972972972973, Blast_Score=293, Evalue=1e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 38856; Mature: 38856

Theoretical pI: Translated: 6.49; Mature: 6.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLENAFQDPQLCHSLLDRLNRALDGRPMRFMEVCGTHTVAIFQSGLRSLLPSAVAHLSG
CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
PGCPVCVTHDAEVAAFLDLAGRDRVIVATFGDLLRVPGPDGRSLKHAQAQGARVEIVYSP
CCCCEEEECCCHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCHHHHCCCCEEEEEECC
LDALSLAAENPGDTVVFLGIGFETTAPTVAATLLTARQRRLDNFCVLSLHKLVPPALRAL
HHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHH
LDDSQCAVEAFLLPGHVSTILGLQPYDFLAKDYGVPGVVGGFQPADILLALCMMAEQLRD
HCCCHHHHHHEECCCHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC
KTPAVVNAYPRAVDDTGNPRARALLEQFFTPADALWRGIGSIPHSGLVLRAEYEDMDAMK
CCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEECHHHHHHHH
RLGLTLPDVPPLAGCRCGDVLKGRITPPACPLFGKKCTPATPVGPCMVSTEGSCAAYFKY
HCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEE
SER
CCC
>Mature Secondary Structure
MQLENAFQDPQLCHSLLDRLNRALDGRPMRFMEVCGTHTVAIFQSGLRSLLPSAVAHLSG
CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
PGCPVCVTHDAEVAAFLDLAGRDRVIVATFGDLLRVPGPDGRSLKHAQAQGARVEIVYSP
CCCCEEEECCCHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCHHHHCCCCEEEEEECC
LDALSLAAENPGDTVVFLGIGFETTAPTVAATLLTARQRRLDNFCVLSLHKLVPPALRAL
HHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHH
LDDSQCAVEAFLLPGHVSTILGLQPYDFLAKDYGVPGVVGGFQPADILLALCMMAEQLRD
HCCCHHHHHHEECCCHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC
KTPAVVNAYPRAVDDTGNPRARALLEQFFTPADALWRGIGSIPHSGLVLRAEYEDMDAMK
CCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEECHHHHHHHH
RLGLTLPDVPPLAGCRCGDVLKGRITPPACPLFGKKCTPATPVGPCMVSTEGSCAAYFKY
HCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEE
SER
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]