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The map label for this gene is ybbO [C]

Identifier: 220903962

GI number: 220903962

Start: 816490

End: 817203

Strand: Reverse

Name: ybbO [C]

Synonym: Ddes_0688

Alternate gene names: 220903962

Gene position: 817203-816490 (Counterclockwise)

Preceding gene: 220903970

Following gene: 220903932

Centisome position: 28.44

GC content: 56.72

Gene sequence:

>714_bases
ATGAATATCAATGCACAGACCATTCTTGTCACAGGCGCCAACGGCGGCATTGGCAAGGCGCTGATCAACGCCTTTCTGGC
AGCCGGAGCCAAAAAGATTTATGCCTGCGCCCGCGATACGGCATCACTGGAGCACTTGCGGAATAACGAAAAAATCCTAC
CTGTCCAGCTCGATATCTCCAAGCCCGCCGCCATTGAAAATGTCGTTGCCGCATGCGGCGACACTACTATCCTGGTGAAC
AATGCGGGCATGGGCGGCAGCGGCCTGCTCGGCGCCCCCCAGGCGGCGCGGGCCGAAATGGAGGTCAACTACTTCGGTAC
ACTGGCCATGTGCTCTGCTTTCGCGCCGGTTCTGGGCAACAATGGCGGCGGTTGCATAGTAAACATCATTTCTGTCATCG
GCCTGGTAAATATGCCCTCCATCGGCACCTACTGCGCCTCAAAGGCAGCCCTGCATTCACTTACCCAGGGGCTGCGCGGT
GTACTGGCCGGACAAAAAACGACTGTCATCGGCGTATACCCAGGTCCTGTCGATACACGCATGACTGACGGTCTTGAAAT
GCCCAAGGCCCGCCCTGAAGCTGTCGCGCTGGAAATTCTCGAAGGCATGAAAAACGGCACCGAGGACATCTACCCTGATG
CGTTTGCCAGGAGCATTCAGAAAGGCCTCGCCGCTGATCCCAAAAAAGTGGAGCGAGAACTGTCGGAATACTAG

Upstream 100 bases:

>100_bases
ACAATTTATCCATAACAACAGCAAATTATACGAGAATAAAGTTACATCACAAAAATTCGTCCCGACACCACGGTCGAATA
TTTTATATGGAGAAAGTATA

Downstream 100 bases:

>100_bases
AGCGATTAACGCTTCAGATGATTGCTTAACGGTCGGCAAATCCGCCTTACAAAGATTTGTCTTCAACTCCTTGTAGAGCA
TGTGGCACTTGCAATAGCTC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNINAQTILVTGANGGIGKALINAFLAAGAKKIYACARDTASLEHLRNNEKILPVQLDISKPAAIENVVAACGDTTILVN
NAGMGGSGLLGAPQAARAEMEVNYFGTLAMCSAFAPVLGNNGGGCIVNIISVIGLVNMPSIGTYCASKAALHSLTQGLRG
VLAGQKTTVIGVYPGPVDTRMTDGLEMPKARPEAVALEILEGMKNGTEDIYPDAFARSIQKGLAADPKKVERELSEY

Sequences:

>Translated_237_residues
MNINAQTILVTGANGGIGKALINAFLAAGAKKIYACARDTASLEHLRNNEKILPVQLDISKPAAIENVVAACGDTTILVN
NAGMGGSGLLGAPQAARAEMEVNYFGTLAMCSAFAPVLGNNGGGCIVNIISVIGLVNMPSIGTYCASKAALHSLTQGLRG
VLAGQKTTVIGVYPGPVDTRMTDGLEMPKARPEAVALEILEGMKNGTEDIYPDAFARSIQKGLAADPKKVERELSEY
>Mature_237_residues
MNINAQTILVTGANGGIGKALINAFLAAGAKKIYACARDTASLEHLRNNEKILPVQLDISKPAAIENVVAACGDTTILVN
NAGMGGSGLLGAPQAARAEMEVNYFGTLAMCSAFAPVLGNNGGGCIVNIISVIGLVNMPSIGTYCASKAALHSLTQGLRG
VLAGQKTTVIGVYPGPVDTRMTDGLEMPKARPEAVALEILEGMKNGTEDIYPDAFARSIQKGLAADPKKVERELSEY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7706318, Length=193, Percent_Identity=32.1243523316062, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=30.2083333333333, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI223718074, Length=186, Percent_Identity=32.258064516129, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=30.8900523560209, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787335, Length=194, Percent_Identity=32.4742268041237, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=31.1475409836066, Blast_Score=66, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=34.7150259067358, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6322067, Length=244, Percent_Identity=32.7868852459016, Blast_Score=82, Evalue=7e-17,
Organism=Drosophila melanogaster, GI21358495, Length=192, Percent_Identity=31.25, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24643142, Length=188, Percent_Identity=33.5106382978723, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24545; Mature: 24545

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINAQTILVTGANGGIGKALINAFLAAGAKKIYACARDTASLEHLRNNEKILPVQLDIS
CCCCCEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
KPAAIENVVAACGDTTILVNNAGMGGSGLLGAPQAARAEMEVNYFGTLAMCSAFAPVLGN
CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHEEEHHHHHHHHHHHHHHHHHCC
NGGGCIVNIISVIGLVNMPSIGTYCASKAALHSLTQGLRGVLAGQKTTVIGVYPGPVDTR
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
MTDGLEMPKARPEAVALEILEGMKNGTEDIYPDAFARSIQKGLAADPKKVERELSEY
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MNINAQTILVTGANGGIGKALINAFLAAGAKKIYACARDTASLEHLRNNEKILPVQLDIS
CCCCCEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
KPAAIENVVAACGDTTILVNNAGMGGSGLLGAPQAARAEMEVNYFGTLAMCSAFAPVLGN
CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHEEEHHHHHHHHHHHHHHHHHCC
NGGGCIVNIISVIGLVNMPSIGTYCASKAALHSLTQGLRGVLAGQKTTVIGVYPGPVDTR
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
MTDGLEMPKARPEAVALEILEGMKNGTEDIYPDAFARSIQKGLAADPKKVERELSEY
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA