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The map label for this gene is rpmD

Identifier: 220903952

GI number: 220903952

Start: 809364

End: 809540

Strand: Direct

Name: rpmD

Synonym: Ddes_0678

Alternate gene names: 220903952

Gene position: 809364-809540 (Clockwise)

Preceding gene: 220903951

Following gene: 220903953

Centisome position: 28.17

GC content: 59.89

Gene sequence:

>177_bases
ATGGCAGAAATCAAGGTAAAACTCGTGCGTTCGCGCATCGGCGCTTCGCCGGCGCAGCGCAAGCTGCTGGACTCCCTTGG
CCTCAAGCGCCGCGAGATGGTCAAGACGTTCAAGGACACCCCGGCCATCCGGGGCATCATCGCCAAAGTTCCGCATATGG
TGGCCGTTGTCGAATAA

Upstream 100 bases:

>100_bases
ACGTGCTTCGCGCCACCATGCAGGGCCTTACCGCCCTGCGCAGCGCCGATGACGTGTCGGCTTTGCGCGGCAAGAAGCTG
GAAGCTCCGAGGAAGTAGTC

Downstream 100 bases:

>100_bases
CGGCCGGAGGACATATACCATGCAACTGCACAATCTCTATCCTTTCCCGGAAGAGCGCAAAACCCGCCGCAGGGTGGGTC
GTGGCTCCGGCTCCGGTCTG

Product: 50S ribosomal protein L30

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 58; Mature: 57

Protein sequence:

>58_residues
MAEIKVKLVRSRIGASPAQRKLLDSLGLKRREMVKTFKDTPAIRGIIAKVPHMVAVVE

Sequences:

>Translated_58_residues
MAEIKVKLVRSRIGASPAQRKLLDSLGLKRREMVKTFKDTPAIRGIIAKVPHMVAVVE
>Mature_57_residues
AEIKVKLVRSRIGASPAQRKLLDSLGLKRREMVKTFKDTPAIRGIIAKVPHMVAVVE

Specific function: Unknown

COG id: COG1841

COG function: function code J; Ribosomal protein L30/L7E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30_DESDA (B8IYK9)

Other databases:

- EMBL:   CP001358
- RefSeq:   YP_002479264.1
- GeneID:   7284351
- GenomeReviews:   CP001358_GR
- KEGG:   dds:Ddes_0678
- HOGENOM:   HBG690556
- GO:   GO:0006412
- HAMAP:   MF_01371_B
- InterPro:   IPR005996
- InterPro:   IPR016082
- Gene3D:   G3DSA:3.30.1390.20
- PIRSF:   PIRSF002211
- TIGRFAMs:   TIGR01308

Pfam domain/function: PF00327 Ribosomal_L30; SSF55129 Ribosomal_L30

EC number: NA

Molecular weight: Translated: 6454; Mature: 6323

Theoretical pI: Translated: 11.69; Mature: 11.69

Prosite motif: PS00634 RIBOSOMAL_L30

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEIKVKLVRSRIGASPAQRKLLDSLGLKRREMVKTFKDTPAIRGIIAKVPHMVAVVE
CCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCHHHHCCC
>Mature Secondary Structure 
AEIKVKLVRSRIGASPAQRKLLDSLGLKRREMVKTFKDTPAIRGIIAKVPHMVAVVE
CHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA