| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
Click here to switch to the map view.
The map label for this gene is pucG [H]
Identifier: 220903916
GI number: 220903916
Start: 778155
End: 779267
Strand: Reverse
Name: pucG [H]
Synonym: Ddes_0641
Alternate gene names: 220903916
Gene position: 779267-778155 (Counterclockwise)
Preceding gene: 220903924
Following gene: 220903914
Centisome position: 27.12
GC content: 61.46
Gene sequence:
>1113_bases ATGAGTACAGTTTTGGGATCGCTTGACCATGTTCTGCTGATGGCCCCCGGCCCCAGCCCCGTTGCCACCAACGTTCTCCA GGCCATGAGCCTGCCCACCCTGGGGCATCTTGACCCCGACTGCATCAAGGTTATGGATGCCATCCAGGACCAGCTGCGGG CCGTGTGCAAAACCGGCAACGTGGTAACCTTTCCCCTGTCGGGCACCGGCTCTGCGGGTATGGAAGCATGCTTTGTGAAC CTGGTGGAACCGGGCGATGCCGTGCTTGTCGTCAACAACGGCGTATTCAGTTCGCGCATGGTAGAGGTGGCTTCGCGCCT GGGCGCAGAGGTGGACGTGGTTGAAAGCCCCTGGGGTACTCCCGTAAAGGTCGAGGACGTCAAAACCCAGCTGGGCAAAA AACACTACAAGATCCTGGCCGTGGTGCATGCCGAGACATCAACGGGCGTCAACAACCCCATTGCCGAGATCGGTGAGCTG GTCAAGGGCAGCGACACTCTTTATATGGTAGACAGCGTGGCCGGACTCGGCGGCGTGGACATGCAGGTGGACAACTGGGG CGTGGACGCTTTTTACAGTGGTTCGCAAAAGTGCCTTTCCGTACCTCCCGGCCTTGCTCCCGCCTCTTTCTCCGAGGCCG CCATGGACGCCATGGCCAGGCGCAAGCACAAAGTACCCAACTGGTACCTTGATGTTTCACTCATCCGCAAATACTGGGAA GGCTCCCCCCGCGTATACCACCATACCGCGCCCATCAACATGTACTACGGCCTGCACCAGGCGCTGGACAACCTGCTGAC GGAAGGGCTGGACGCGGCCTTTGCACGGCACAAGGCCATGCATCACCGCCTGGCGGACGGCCTGGCAGAACTGGGCTTCA GCCTGTATGTAAAGGAAGGCGCGGCACCTCAGGTGAACCTTTTCATTCCTCCCGCCGGCGTGGACGCCAACGCCCTGCGC GCCTGCCTGCGCGAAAAGCACAAGATTGAAGTGGCGGGCGGCCTTGGGGCGCTTGCCGGTAAGGTTATCCGCGTGGGCGT TATGGGCGAAGGCGCACGGCCCGAAGCCATTGACAAACTGCTTGCCGCTGTCCGGGCCTGCCTCGGCCGGTAG
Upstream 100 bases:
>100_bases AAAAATTTTAAGCTGCGTACCGCGCAGCGGACGTCCGTCTGTACGGACGTCGAAATACCCAGCCCTGACGAGTATTAGCC GTCAACCACAGGAGACTGCC
Downstream 100 bases:
>100_bases CCCTTGCAACCAGGAGCGCGCGCGGGGCACCCGCCGCGCGCGCTTCGCTTTCAGACCTTTTTTCCATCAATTTTTTTCAT GCCCGACGCATTTTTTCCAC
Product: Alanine--glyoxylate transaminase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 370; Mature: 369
Protein sequence:
>370_residues MSTVLGSLDHVLLMAPGPSPVATNVLQAMSLPTLGHLDPDCIKVMDAIQDQLRAVCKTGNVVTFPLSGTGSAGMEACFVN LVEPGDAVLVVNNGVFSSRMVEVASRLGAEVDVVESPWGTPVKVEDVKTQLGKKHYKILAVVHAETSTGVNNPIAEIGEL VKGSDTLYMVDSVAGLGGVDMQVDNWGVDAFYSGSQKCLSVPPGLAPASFSEAAMDAMARRKHKVPNWYLDVSLIRKYWE GSPRVYHHTAPINMYYGLHQALDNLLTEGLDAAFARHKAMHHRLADGLAELGFSLYVKEGAAPQVNLFIPPAGVDANALR ACLREKHKIEVAGGLGALAGKVIRVGVMGEGARPEAIDKLLAAVRACLGR
Sequences:
>Translated_370_residues MSTVLGSLDHVLLMAPGPSPVATNVLQAMSLPTLGHLDPDCIKVMDAIQDQLRAVCKTGNVVTFPLSGTGSAGMEACFVN LVEPGDAVLVVNNGVFSSRMVEVASRLGAEVDVVESPWGTPVKVEDVKTQLGKKHYKILAVVHAETSTGVNNPIAEIGEL VKGSDTLYMVDSVAGLGGVDMQVDNWGVDAFYSGSQKCLSVPPGLAPASFSEAAMDAMARRKHKVPNWYLDVSLIRKYWE GSPRVYHHTAPINMYYGLHQALDNLLTEGLDAAFARHKAMHHRLADGLAELGFSLYVKEGAAPQVNLFIPPAGVDANALR ACLREKHKIEVAGGLGALAGKVIRVGVMGEGARPEAIDKLLAAVRACLGR >Mature_369_residues STVLGSLDHVLLMAPGPSPVATNVLQAMSLPTLGHLDPDCIKVMDAIQDQLRAVCKTGNVVTFPLSGTGSAGMEACFVNL VEPGDAVLVVNNGVFSSRMVEVASRLGAEVDVVESPWGTPVKVEDVKTQLGKKHYKILAVVHAETSTGVNNPIAEIGELV KGSDTLYMVDSVAGLGGVDMQVDNWGVDAFYSGSQKCLSVPPGLAPASFSEAAMDAMARRKHKVPNWYLDVSLIRKYWEG SPRVYHHTAPINMYYGLHQALDNLLTEGLDAAFARHKAMHHRLADGLAELGFSLYVKEGAAPQVNLFIPPAGVDANALRA CLREKHKIEVAGGLGALAGKVIRVGVMGEGARPEAIDKLLAAVRACLGR
Specific function: Could encode ureidoglycolase or L-alanine:glyoxylate aminotransferase, or perhaps both activities [H]
COG id: COG0075
COG function: function code E; Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4557289, Length=366, Percent_Identity=36.3387978142077, Blast_Score=241, Evalue=6e-64, Organism=Caenorhabditis elegans, GI17536281, Length=361, Percent_Identity=36.8421052631579, Blast_Score=241, Evalue=3e-64, Organism=Saccharomyces cerevisiae, GI6321079, Length=383, Percent_Identity=28.7206266318538, Blast_Score=133, Evalue=3e-32, Organism=Drosophila melanogaster, GI17530823, Length=355, Percent_Identity=39.7183098591549, Blast_Score=270, Evalue=1e-72,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000192 - InterPro: IPR020578 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00266 Aminotran_5 [H]
EC number: 2.6.1.-
Molecular weight: Translated: 39280; Mature: 39149
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: PS00595 AA_TRANSFER_CLASS_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTVLGSLDHVLLMAPGPSPVATNVLQAMSLPTLGHLDPDCIKVMDAIQDQLRAVCKTGN CCCHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC VVTFPLSGTGSAGMEACFVNLVEPGDAVLVVNNGVFSSRMVEVASRLGAEVDVVESPWGT EEEEECCCCCCCCHHHHEEEEECCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC PVKVEDVKTQLGKKHYKILAVVHAETSTGVNNPIAEIGELVKGSDTLYMVDSVAGLGGVD CEEHHHHHHHHCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCE MQVDNWGVDAFYSGSQKCLSVPPGLAPASFSEAAMDAMARRKHKVPNWYLDVSLIRKYWE EEECCCCCCEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHC GSPRVYHHTAPINMYYGLHQALDNLLTEGLDAAFARHKAMHHRLADGLAELGFSLYVKEG CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC AAPQVNLFIPPAGVDANALRACLREKHKIEVAGGLGALAGKVIRVGVMGEGARPEAIDKL CCCEEEEEECCCCCCHHHHHHHHHHCCEEEEECCHHHHHHHEEEEEECCCCCCHHHHHHH LAAVRACLGR HHHHHHHHCC >Mature Secondary Structure STVLGSLDHVLLMAPGPSPVATNVLQAMSLPTLGHLDPDCIKVMDAIQDQLRAVCKTGN CCHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC VVTFPLSGTGSAGMEACFVNLVEPGDAVLVVNNGVFSSRMVEVASRLGAEVDVVESPWGT EEEEECCCCCCCCHHHHEEEEECCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC PVKVEDVKTQLGKKHYKILAVVHAETSTGVNNPIAEIGELVKGSDTLYMVDSVAGLGGVD CEEHHHHHHHHCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCE MQVDNWGVDAFYSGSQKCLSVPPGLAPASFSEAAMDAMARRKHKVPNWYLDVSLIRKYWE EEECCCCCCEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHC GSPRVYHHTAPINMYYGLHQALDNLLTEGLDAAFARHKAMHHRLADGLAELGFSLYVKEG CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC AAPQVNLFIPPAGVDANALRACLREKHKIEVAGGLGALAGKVIRVGVMGEGARPEAIDKL CCCEEEEEECCCCCCHHHHHHHHHHCCEEEEECCHHHHHHHEEEEEECCCCCCHHHHHHH LAAVRACLGR HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 11344136 [H]