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The map label for this gene is rlpA [H]

Identifier: 220903790

GI number: 220903790

Start: 622449

End: 623249

Strand: Reverse

Name: rlpA [H]

Synonym: Ddes_0513

Alternate gene names: 220903790

Gene position: 623249-622449 (Counterclockwise)

Preceding gene: 220903791

Following gene: 220903789

Centisome position: 21.69

GC content: 59.18

Gene sequence:

>801_bases
ATGAAGTATTCACGCTGGCCTTCCATGCTGGCGGTCGCGGTCGCATGTATGCTATTGGCCGCCCCCATGAAAGCCGACGC
GGCTTCTGCAAGCGCTCCTTCCGCTGAACTCTCTTCAAACGCATCCTCATCCGGCGCCTCCAAAGCTGTAAAAAAATCAT
CCCAAGCGCGCCCCGCCAAGTCTGAAAAGAATAAAAAAGCTGTTAAAACCAGCCAGTCCGGCAAAGCGGCTAAAACTGCC
AAAAGCGGCAAGGCAGCAAAGTCTTCTGCCAAAAGCAAAGCCGTATCCGAACAAAGCGTTGACAGCCGCGACATATGGCT
CAAACGCGCCCAGCAAAGCGAAGTTTTCACCGGCAAAGCATCCTGGTACGGCCGCGACTTTCACGGCGGCGCCACAGCCA
GCGGCCTTAACTACGACATGTACACCTTCACCGCTGCCCACCGTACTCTGCCCATGGGGACTGTCGTGCGTGTGACCGAC
CAGGAGAACGGCAAGAGCGTCATGGTTTGCGTGACAGACCGCGGCCCCTTTGTGCGCGGCCGCATCATTGACCTTTCTTT
TGCCGCTGCCCAGCAGCTTGACCTTGGCACACGTGGCGTGGGCAAGGTGGAGCTTGAGGTGGTCAGCGACGAAAGCGGAA
CCCCCCTGCAGGCCGATCAGGCCTACTATGTGCGTTACAATGCCGCCATGGGAGACGAACGCATCGGCCCCTTCCGTGCC
TTTGCGGATGCCGCCGCCATGCATGAGGCCCTGCGCCAGGCCCATCCCGAAGCAGAAGTTGTACTGGGGCACTCCCGCTA
G

Upstream 100 bases:

>100_bases
GGCGCTTCCACCGTCATTGGAGAGTCTCCGGGGTCAGGACCACGGGCGTGGTCCGCCCGGCATCCGCCGGACAGCCTCGA
ACTGTAACCAAGGAATGATC

Downstream 100 bases:

>100_bases
CAGCCTGTATCTGTAGCGCAGCACACGCAGCACCGATTTTTCGGCAATCTTTTCAGTCGCCCGGCGCGCCGCACCAAAGG
CAAGCGCCTGCGGCACAGTT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKYSRWPSMLAVAVACMLLAAPMKADAASASAPSAELSSNASSSGASKAVKKSSQARPAKSEKNKKAVKTSQSGKAAKTA
KSGKAAKSSAKSKAVSEQSVDSRDIWLKRAQQSEVFTGKASWYGRDFHGGATASGLNYDMYTFTAAHRTLPMGTVVRVTD
QENGKSVMVCVTDRGPFVRGRIIDLSFAAAQQLDLGTRGVGKVELEVVSDESGTPLQADQAYYVRYNAAMGDERIGPFRA
FADAAAMHEALRQAHPEAEVVLGHSR

Sequences:

>Translated_266_residues
MKYSRWPSMLAVAVACMLLAAPMKADAASASAPSAELSSNASSSGASKAVKKSSQARPAKSEKNKKAVKTSQSGKAAKTA
KSGKAAKSSAKSKAVSEQSVDSRDIWLKRAQQSEVFTGKASWYGRDFHGGATASGLNYDMYTFTAAHRTLPMGTVVRVTD
QENGKSVMVCVTDRGPFVRGRIIDLSFAAAQQLDLGTRGVGKVELEVVSDESGTPLQADQAYYVRYNAAMGDERIGPFRA
FADAAAMHEALRQAHPEAEVVLGHSR
>Mature_266_residues
MKYSRWPSMLAVAVACMLLAAPMKADAASASAPSAELSSNASSSGASKAVKKSSQARPAKSEKNKKAVKTSQSGKAAKTA
KSGKAAKSSAKSKAVSEQSVDSRDIWLKRAQQSEVFTGKASWYGRDFHGGATASGLNYDMYTFTAAHRTLPMGTVVRVTD
QENGKSVMVCVTDRGPFVRGRIIDLSFAAAQQLDLGTRGVGKVELEVVSDESGTPLQADQAYYVRYNAAMGDERIGPFRA
FADAAAMHEALRQAHPEAEVVLGHSR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=94, Percent_Identity=35.1063829787234, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 28226; Mature: 28226

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYSRWPSMLAVAVACMLLAAPMKADAASASAPSAELSSNASSSGASKAVKKSSQARPAK
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCC
SEKNKKAVKTSQSGKAAKTAKSGKAAKSSAKSKAVSEQSVDSRDIWLKRAQQSEVFTGKA
HHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEECCC
SWYGRDFHGGATASGLNYDMYTFTAAHRTLPMGTVVRVTDQENGKSVMVCVTDRGPFVRG
CCCCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCEEEE
RIIDLSFAAAQQLDLGTRGVGKVELEVVSDESGTPLQADQAYYVRYNAAMGDERIGPFRA
EEEEEEHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCHHHH
FADAAAMHEALRQAHPEAEVVLGHSR
HHHHHHHHHHHHHHCCCEEEEECCCC
>Mature Secondary Structure
MKYSRWPSMLAVAVACMLLAAPMKADAASASAPSAELSSNASSSGASKAVKKSSQARPAK
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCC
SEKNKKAVKTSQSGKAAKTAKSGKAAKSSAKSKAVSEQSVDSRDIWLKRAQQSEVFTGKA
HHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEECCC
SWYGRDFHGGATASGLNYDMYTFTAAHRTLPMGTVVRVTDQENGKSVMVCVTDRGPFVRG
CCCCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCEEEE
RIIDLSFAAAQQLDLGTRGVGKVELEVVSDESGTPLQADQAYYVRYNAAMGDERIGPFRA
EEEEEEHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCHHHH
FADAAAMHEALRQAHPEAEVVLGHSR
HHHHHHHHHHHHHHCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]