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The map label for this gene is rbpE [H]

Identifier: 220903771

GI number: 220903771

Start: 603341

End: 603607

Strand: Direct

Name: rbpE [H]

Synonym: Ddes_0493

Alternate gene names: 220903771

Gene position: 603341-603607 (Clockwise)

Preceding gene: 220903769

Following gene: 220903772

Centisome position: 21.0

GC content: 53.18

Gene sequence:

>267_bases
ATGGCTACTTCTATTTATGTTGGTAATCTTTCTTGGTCTACCACGCAGGGCGACGTTGAATCCCTGTTCAGCGCTTTTGG
TCAGGTGCTTTCCGTTAACCTGATTTCAGATCGTGAAACCGGTCGTGCTCGCGGCTTTGGTTTTGTTGAAATGGAAGATG
ACGATGCTGCCAACGCGATCTCTGCTCTTGATGGCAAGGAAGTTGACGGCCGCAGCTTGCGCGTGAACAAGGCCGAGCCC
AAAAAGCCGGCCGCCCGCCGCTGGTAA

Upstream 100 bases:

>100_bases
CATTGATTGGGTATAGTAAATTTTTCGCCAGAGACTTTACATGGGTAAGGCTTCAGCAGAAAGTCTACCTCCCCCGTAAC
CCCCCCCCATGGAGTCTTTT

Downstream 100 bases:

>100_bases
GCCTAGCGCATACTAATGAAACAAAGCCCCCGGCACAGATTGCCGGGGGCTTTGTTATTTCCTTTTCCGCGCTGGCGTCA
TGACGATTACTCCCCCCCAG

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MATSIYVGNLSWSTTQGDVESLFSAFGQVLSVNLISDRETGRARGFGFVEMEDDDAANAISALDGKEVDGRSLRVNKAEP
KKPAARRW

Sequences:

>Translated_88_residues
MATSIYVGNLSWSTTQGDVESLFSAFGQVLSVNLISDRETGRARGFGFVEMEDDDAANAISALDGKEVDGRSLRVNKAEP
KKPAARRW
>Mature_87_residues
ATSIYVGNLSWSTTQGDVESLFSAFGQVLSVNLISDRETGRARGFGFVEMEDDDAANAISALDGKEVDGRSLRVNKAEPK
KPAARRW

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4502847, Length=75, Percent_Identity=49.3333333333333, Blast_Score=79, Evalue=8e-16,
Organism=Homo sapiens, GI14149675, Length=80, Percent_Identity=41.25, Blast_Score=72, Evalue=8e-14,
Organism=Homo sapiens, GI4557493, Length=80, Percent_Identity=41.25, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI5803137, Length=75, Percent_Identity=40, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI4507499, Length=83, Percent_Identity=37.3493975903614, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI77695912, Length=83, Percent_Identity=37.3493975903614, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI188219593, Length=83, Percent_Identity=36.144578313253, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI188219591, Length=83, Percent_Identity=36.144578313253, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI242117971, Length=75, Percent_Identity=37.3333333333333, Blast_Score=62, Evalue=9e-11,
Organism=Homo sapiens, GI21361809, Length=75, Percent_Identity=37.3333333333333, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17508585, Length=76, Percent_Identity=46.0526315789474, Blast_Score=76, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=44.7368421052632, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=45, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508567, Length=76, Percent_Identity=46.0526315789474, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17532819, Length=83, Percent_Identity=39.7590361445783, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17532817, Length=83, Percent_Identity=39.7590361445783, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17539498, Length=84, Percent_Identity=38.0952380952381, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI17137710, Length=80, Percent_Identity=42.5, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI161084522, Length=78, Percent_Identity=37.1794871794872, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221331233, Length=78, Percent_Identity=37.1794871794872, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24646609, Length=83, Percent_Identity=34.9397590361446, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24646607, Length=83, Percent_Identity=34.9397590361446, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24646605, Length=83, Percent_Identity=34.9397590361446, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI161084519, Length=78, Percent_Identity=37.1794871794872, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI62484464, Length=78, Percent_Identity=37.1794871794872, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9566; Mature: 9434

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATSIYVGNLSWSTTQGDVESLFSAFGQVLSVNLISDRETGRARGFGFVEMEDDDAANAI
CCCEEEECCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEECCCCCHHHH
SALDGKEVDGRSLRVNKAEPKKPAARRW
HHCCCCCCCCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
ATSIYVGNLSWSTTQGDVESLFSAFGQVLSVNLISDRETGRARGFGFVEMEDDDAANAI
CCEEEECCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEECCCCCHHHH
SALDGKEVDGRSLRVNKAEPKKPAARRW
HHCCCCCCCCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]