| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is pheT [H]
Identifier: 220903762
GI number: 220903762
Start: 592670
End: 595075
Strand: Reverse
Name: pheT [H]
Synonym: Ddes_0484
Alternate gene names: 220903762
Gene position: 595075-592670 (Counterclockwise)
Preceding gene: 220903763
Following gene: 220903761
Centisome position: 20.71
GC content: 63.22
Gene sequence:
>2406_bases ATGCTGCTCTCACTTTCATGGCTGCGTGAATTTACGCCTTACGAAGGCACGGCTGAAGCTCTGGGCGACCGCCTGACCAT GCTCGGCCTGGAGCTGGAAGACATCCGCCGTCCCTTTGACGCCATCGGCTCCATTGTGGTGGGGCTGGTAGTCGCCTGCG AAGACCATCCCCAGTCCGACCACCTGCATGTCTGCAAGGTAGACGCGGGCCAGGGCGAACTGCTGGACATCGTCTGCGGC GCCCCCAACGTGGCCGAAGGCCAAAAGGTGCCCGTAGCCCTTGTGGGCACGACCATGCCTGACGGCCTCGTCATCAAAAA GGCCAAACTGCGCGGCGCGCCGTCATTCGGCATGATCTGTTCCGAGCGCGAACTGGGCCTGACCGAAGACCACGCCGGTA TTATGGTGCTGCCCGACAGTTTTGAGGTGGGCAAACCACTGGTTGACCAGCTTGTGCTGGACCGTGAATTGCTGGATATC TCCGTTACGCCCAACAGGGCAGACTGCCTTTCCGTCCTGGGTCTCGCCCGTGAAGCCGCGCTGGCCTTCAGCCTGCCGTT GAACATTCCGGGCCTGCCCCTTCAGGTGGACGAAAGTGCGCCGCAGCGCCTCATTCCCATTGATATTGAAGATCCCGACC TCTGCCGCCTCTATTCCGGCAGGGTCATCACGGGAGCAAAAATCGGCCCCTCCCCCATGCAGGTGCGGCATCGCCTGCAT GCCATGGGTGTGCGCCCGGTTTCCAATATTGTGGACGTGACCAACTACATCCTGCTTGAATACGGCCAGCCACTGCACTC CTTTGACCTCGACAAGCTCGAGGGCGGCCGCATTGTAGTCAGCCGCGCCAAGGACGGCGAAAAAATCACCACCCTCGACG GGCAGGAGCGCATCCTCACCCCGCAGGATCTGTGCATCCGCGATGCTTCGCGCGCCGTGGCACTGGCGGGCGTAATGGGG GGCCTCAATACGGAAATCACCGCAGAAAGCAGCAATGTTTTTCTTGAAAGTGCTGTTTTCCTGCCTGCGGCCATCCGCAA GACCTCGCGCCGGCTTGGACTTTCGTCCGAATCTTCCTACCGGTTTGAACGTGGCATTGACCAGCAGCGCACGGTATGGG CGCTGGACCGCGCCTGCGCCATGATGGCCGCCCTGAGCGGCGGCACGGTACAGCCGGGCCTTTCCGTTTCCGAACCGCGC CCCTTCAAGGCCGCGAGCATCGACTTTCGCCCGGCCCGGGCCAATGCCCTGCTGGGGGTAAAGCTCGCGCCGGAATTTGA CCAGGCCGTGCTTACCGGCATGGGCTGCACGGTAGACGCCTCCACCGACGTGTGGCGCGTGGGGCAGCCCTCCTGGCGGC CCGACCTCACCCGCGAGGCCGACCTTATCGAAGAAGTGGGCCGGGTTCACGGGCTGGACACCATCGCCCCCGAACTGCCC CCCGTCTGCCGCGATCTTGCGCATGCGGGCGAACCGGAATCGCGCTTTGCCTTCTGGCTGCGTCTCAAGCACTGGGGAGC GGGGCTGGGCCTGAATGAAGCCGTCAACTACAGCTTTGTGGGCCATAAGGATCTGGATCACCTGGGGCTGCCACGCGAAG GCCGCATTTCCATCATGAATCCCCTGTCAGCGGAGCAGGACGCCCTGCGCACCGCACTGGCCCCCGGCCTGCTGCACGAC CTGCGCAACAACCTGGCCCAGGGCGCACAGGGGCTGCGCTTTTTCGAGCTTGCCCATACCTTTGAGGCTGATGCCGCCTC CGAGACCACTGCCCGCGAAACCGGCATGCTGGGCGTGCTGCTGTACGGCTCGCGTTTTGACACGGCATGGCCCCAGGCTG AAGGCGACATGGATTATATGGACCTCAAGGGCATTGTGGAAAACCTTATGCGTTTTCTGCACCTGCCGGCGCCGGTCTGC ACGCTTGCCGCGGAACATCCCTTCCTGCTGCCCTGCGTTGAAGTTGCCGTTGACGGCCGTGCCGCAGGCGTTATGGGGCG TGTCAAGCCCGCCATGGCCGATGAGTTTCATGCCCGCAAAGACGTATGGCTGGCCGAGCTGAACCTGGAAATCCTGCGCG AGCTGCACGATGCGGCCCAGGTGCGCTTCCGGCCTCTGCCCGTGTATCCGCCGGTACGCCGCGACATTACGGTCATGGCC GGGCCGGGGCTTACTGTGAGCGCCGTCATGGCGCATGTGCGCGGCCTTGCCCTGCCCCTGCTCGAAGACCTTGTTCTTGT AGACTGCTTTGAACCCAAGCCGGCCGAGGGGCAGGAGGCTGTGCGAAACCTCACCTTCCGCCTGACCTTCCGCCACGCGG ACCGCACCCTCAAGGATGCAGAAGTGGACAAGGAACGGGAAAAAGTGGCACAGTCGCTCGTAGCGGCTCTGGGAGTAAAA ATCTAG
Upstream 100 bases:
>100_bases CGCGTGGGCTGCATCTATTTGCGGCCCTGTTTTGTAATGAACACCACTACCTATGACGCCCAACGCGGCGGCCCAAGGCC CCGCGCAAACAGGACATGCT
Downstream 100 bases:
>100_bases TCGCGCTGCCGCGCCGCAACACGGCAGGCAAAGTGAGACCGCTCTGAAAATTACGCCGCCCGCCGGAGCATGGAACGCCA TGCTTCCGGCGCTTGGCGCT
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 801; Mature: 801
Protein sequence:
>801_residues MLLSLSWLREFTPYEGTAEALGDRLTMLGLELEDIRRPFDAIGSIVVGLVVACEDHPQSDHLHVCKVDAGQGELLDIVCG APNVAEGQKVPVALVGTTMPDGLVIKKAKLRGAPSFGMICSERELGLTEDHAGIMVLPDSFEVGKPLVDQLVLDRELLDI SVTPNRADCLSVLGLAREAALAFSLPLNIPGLPLQVDESAPQRLIPIDIEDPDLCRLYSGRVITGAKIGPSPMQVRHRLH AMGVRPVSNIVDVTNYILLEYGQPLHSFDLDKLEGGRIVVSRAKDGEKITTLDGQERILTPQDLCIRDASRAVALAGVMG GLNTEITAESSNVFLESAVFLPAAIRKTSRRLGLSSESSYRFERGIDQQRTVWALDRACAMMAALSGGTVQPGLSVSEPR PFKAASIDFRPARANALLGVKLAPEFDQAVLTGMGCTVDASTDVWRVGQPSWRPDLTREADLIEEVGRVHGLDTIAPELP PVCRDLAHAGEPESRFAFWLRLKHWGAGLGLNEAVNYSFVGHKDLDHLGLPREGRISIMNPLSAEQDALRTALAPGLLHD LRNNLAQGAQGLRFFELAHTFEADAASETTARETGMLGVLLYGSRFDTAWPQAEGDMDYMDLKGIVENLMRFLHLPAPVC TLAAEHPFLLPCVEVAVDGRAAGVMGRVKPAMADEFHARKDVWLAELNLEILRELHDAAQVRFRPLPVYPPVRRDITVMA GPGLTVSAVMAHVRGLALPLLEDLVLVDCFEPKPAEGQEAVRNLTFRLTFRHADRTLKDAEVDKEREKVAQSLVAALGVK I
Sequences:
>Translated_801_residues MLLSLSWLREFTPYEGTAEALGDRLTMLGLELEDIRRPFDAIGSIVVGLVVACEDHPQSDHLHVCKVDAGQGELLDIVCG APNVAEGQKVPVALVGTTMPDGLVIKKAKLRGAPSFGMICSERELGLTEDHAGIMVLPDSFEVGKPLVDQLVLDRELLDI SVTPNRADCLSVLGLAREAALAFSLPLNIPGLPLQVDESAPQRLIPIDIEDPDLCRLYSGRVITGAKIGPSPMQVRHRLH AMGVRPVSNIVDVTNYILLEYGQPLHSFDLDKLEGGRIVVSRAKDGEKITTLDGQERILTPQDLCIRDASRAVALAGVMG GLNTEITAESSNVFLESAVFLPAAIRKTSRRLGLSSESSYRFERGIDQQRTVWALDRACAMMAALSGGTVQPGLSVSEPR PFKAASIDFRPARANALLGVKLAPEFDQAVLTGMGCTVDASTDVWRVGQPSWRPDLTREADLIEEVGRVHGLDTIAPELP PVCRDLAHAGEPESRFAFWLRLKHWGAGLGLNEAVNYSFVGHKDLDHLGLPREGRISIMNPLSAEQDALRTALAPGLLHD LRNNLAQGAQGLRFFELAHTFEADAASETTARETGMLGVLLYGSRFDTAWPQAEGDMDYMDLKGIVENLMRFLHLPAPVC TLAAEHPFLLPCVEVAVDGRAAGVMGRVKPAMADEFHARKDVWLAELNLEILRELHDAAQVRFRPLPVYPPVRRDITVMA GPGLTVSAVMAHVRGLALPLLEDLVLVDCFEPKPAEGQEAVRNLTFRLTFRHADRTLKDAEVDKEREKVAQSLVAALGVK I >Mature_801_residues MLLSLSWLREFTPYEGTAEALGDRLTMLGLELEDIRRPFDAIGSIVVGLVVACEDHPQSDHLHVCKVDAGQGELLDIVCG APNVAEGQKVPVALVGTTMPDGLVIKKAKLRGAPSFGMICSERELGLTEDHAGIMVLPDSFEVGKPLVDQLVLDRELLDI SVTPNRADCLSVLGLAREAALAFSLPLNIPGLPLQVDESAPQRLIPIDIEDPDLCRLYSGRVITGAKIGPSPMQVRHRLH AMGVRPVSNIVDVTNYILLEYGQPLHSFDLDKLEGGRIVVSRAKDGEKITTLDGQERILTPQDLCIRDASRAVALAGVMG GLNTEITAESSNVFLESAVFLPAAIRKTSRRLGLSSESSYRFERGIDQQRTVWALDRACAMMAALSGGTVQPGLSVSEPR PFKAASIDFRPARANALLGVKLAPEFDQAVLTGMGCTVDASTDVWRVGQPSWRPDLTREADLIEEVGRVHGLDTIAPELP PVCRDLAHAGEPESRFAFWLRLKHWGAGLGLNEAVNYSFVGHKDLDHLGLPREGRISIMNPLSAEQDALRTALAPGLLHD LRNNLAQGAQGLRFFELAHTFEADAASETTARETGMLGVLLYGSRFDTAWPQAEGDMDYMDLKGIVENLMRFLHLPAPVC TLAAEHPFLLPCVEVAVDGRAAGVMGRVKPAMADEFHARKDVWLAELNLEILRELHDAAQVRFRPLPVYPPVRRDITVMA GPGLTVSAVMAHVRGLALPLLEDLVLVDCFEPKPAEGQEAVRNLTFRLTFRHADRTLKDAEVDKEREKVAQSLVAALGVK I
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=802, Percent_Identity=34.5386533665835, Blast_Score=428, Evalue=1e-121, Organism=Drosophila melanogaster, GI21355211, Length=398, Percent_Identity=23.6180904522613, Blast_Score=74, Evalue=4e-13,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 87205; Mature: 87205
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLSLSWLREFTPYEGTAEALGDRLTMLGLELEDIRRPFDAIGSIVVGLVVACEDHPQSD CEEEHHHHHHCCCCCCHHHHHCCHHHHCCCCHHHHHCHHHHHHHHHHHHHHEECCCCCCC HLHVCKVDAGQGELLDIVCGAPNVAEGQKVPVALVGTTMPDGLVIKKAKLRGAPSFGMIC CEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEHHHCCCCCCCCEE SERELGLTEDHAGIMVLPDSFEVGKPLVDQLVLDRELLDISVTPNRADCLSVLGLAREAA CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHH LAFSLPLNIPGLPLQVDESAPQRLIPIDIEDPDLCRLYSGRVITGAKIGPSPMQVRHRLH EEEECCCCCCCCCEEECCCCCCCEEEEECCCCCHHHHCCCCEEECCCCCCCHHHHHHHHH AMGVRPVSNIVDVTNYILLEYGQPLHSFDLDKLEGGRIVVSRAKDGEKITTLDGQERILT HCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCC PQDLCIRDASRAVALAGVMGGLNTEITAESSNVFLESAVFLPAAIRKTSRRLGLSSESSY HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCC RFERGIDQQRTVWALDRACAMMAALSGGTVQPGLSVSEPRPFKAASIDFRPARANALLGV HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE KLAPEFDQAVLTGMGCTVDASTDVWRVGQPSWRPDLTREADLIEEVGRVHGLDTIAPELP EECCCHHHHHHHCCCCEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCC PVCRDLAHAGEPESRFAFWLRLKHWGAGLGLNEAVNYSFVGHKDLDHLGLPREGRISIMN HHHHHHHHCCCCCHHEEEEEEEEHHCCCCCCCCCCCEEEECCCCCHHCCCCCCCCEEEEC PLSAEQDALRTALAPGLLHDLRNNLAQGAQGLRFFELAHTFEADAASETTARETGMLGVL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHCCCEEEE LYGSRFDTAWPQAEGDMDYMDLKGIVENLMRFLHLPAPVCTLAAEHPFLLPCVEVAVDGR EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEHHHHHHCCCC AAGVMGRVKPAMADEFHARKDVWLAELNLEILRELHDAAQVRFRPLPVYPPVRRDITVMA HHCHHHCCCHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHCEEECCCCCCCCCCCEEEEE GPGLTVSAVMAHVRGLALPLLEDLVLVDCFEPKPAEGQEAVRNLTFRLTFRHADRTLKDA CCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHCEEEEEEEECCCCCHHHH EVDKEREKVAQSLVAALGVKI HCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MLLSLSWLREFTPYEGTAEALGDRLTMLGLELEDIRRPFDAIGSIVVGLVVACEDHPQSD CEEEHHHHHHCCCCCCHHHHHCCHHHHCCCCHHHHHCHHHHHHHHHHHHHHEECCCCCCC HLHVCKVDAGQGELLDIVCGAPNVAEGQKVPVALVGTTMPDGLVIKKAKLRGAPSFGMIC CEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEHHHCCCCCCCCEE SERELGLTEDHAGIMVLPDSFEVGKPLVDQLVLDRELLDISVTPNRADCLSVLGLAREAA CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHH LAFSLPLNIPGLPLQVDESAPQRLIPIDIEDPDLCRLYSGRVITGAKIGPSPMQVRHRLH EEEECCCCCCCCCEEECCCCCCCEEEEECCCCCHHHHCCCCEEECCCCCCCHHHHHHHHH AMGVRPVSNIVDVTNYILLEYGQPLHSFDLDKLEGGRIVVSRAKDGEKITTLDGQERILT HCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCC PQDLCIRDASRAVALAGVMGGLNTEITAESSNVFLESAVFLPAAIRKTSRRLGLSSESSY HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCC RFERGIDQQRTVWALDRACAMMAALSGGTVQPGLSVSEPRPFKAASIDFRPARANALLGV HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE KLAPEFDQAVLTGMGCTVDASTDVWRVGQPSWRPDLTREADLIEEVGRVHGLDTIAPELP EECCCHHHHHHHCCCCEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCC PVCRDLAHAGEPESRFAFWLRLKHWGAGLGLNEAVNYSFVGHKDLDHLGLPREGRISIMN HHHHHHHHCCCCCHHEEEEEEEEHHCCCCCCCCCCCEEEECCCCCHHCCCCCCCCEEEEC PLSAEQDALRTALAPGLLHDLRNNLAQGAQGLRFFELAHTFEADAASETTARETGMLGVL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHCCCEEEE LYGSRFDTAWPQAEGDMDYMDLKGIVENLMRFLHLPAPVCTLAAEHPFLLPCVEVAVDGR EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEHHHHHHCCCC AAGVMGRVKPAMADEFHARKDVWLAELNLEILRELHDAAQVRFRPLPVYPPVRRDITVMA HHCHHHCCCHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHCEEECCCCCCCCCCCEEEEE GPGLTVSAVMAHVRGLALPLLEDLVLVDCFEPKPAEGQEAVRNLTFRLTFRHADRTLKDA CCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHCEEEEEEEECCCCCHHHH EVDKEREKVAQSLVAALGVKI HCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA