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The map label for this gene is ybgF [C]

Identifier: 220903667

GI number: 220903667

Start: 472648

End: 473625

Strand: Direct

Name: ybgF [C]

Synonym: Ddes_0388

Alternate gene names: 220903667

Gene position: 472648-473625 (Clockwise)

Preceding gene: 220903666

Following gene: 220903668

Centisome position: 16.45

GC content: 63.6

Gene sequence:

>978_bases
ATGCGCACATTCCGTTCATTGTGCCTTGTAACGCTGGCTTGCGCTGCTCTGCCGCTGAGCGCCTGCGTATCCGGCGGCAG
TTCCAGCAGCGGCAGCCTCAGCCTTGAACAGCAGGTGCAGCAGCACGACGTGCAGTTGCGGCAGATGCAGCCCTCGCAGG
CCGACGCCTGGAATCAGATACAGGCGCTGCGGCAGGAGCTGAATACCGTCAAGGGCCAGATGGATGACCTCAACAACGCC
GGCGGCGCGCGCGCCCTTGTGGACCGTGTGAACCGGCATGACGAAGCCCTGCGCCAGGTTGAGCGCAGCATGGCCCTGAA
CCTGAACCTTGGCGAGCCGCCGTCCGCGGTGCCCGCCATGGCGTCTTCGGCTCCGGCCGCGCCCCAGGCCCCCAGCTATG
GTCTGCCCACTTACGGCCAGGCCGCGGCGGGTACTGTGGCCGCAGGCAGCACCGGCTATGCCGCTTCGGTGCCTGAAGGC
GTGCAGCCCTACGGCGGACAGGCCGCCGGCGCGTCCGGTCAGGTTCCGGCTCAGGCTCCGGACGGCAGCACCTGGGGCCA
GCCCTCGCCGCAGCCCCAGCCGCAGGTGCAGGTTCCGCAAAAAGACATTTCGCTGGCCCTTTTTGACGCGGGCGTCAATG
CCTACAATGCCCGTAAATATGATGAGGCCCAGCGCTCTTTCACCGACTTTCTGAAAAATTACAAAGGCCATAACCTGGCT
TCTGAAGCCCAGTTCTACCTTGCGGAATGCTACTTCCAGCGCAACCAGTTCGCGGATGCGGCCCTGTCCTATGACAAGGT
GATCAAGGAATACCCCAAGTCTTCCAGTGCGCCGGGCGCGTACCTCAAGCAGGGCATCAGCTTCAGCAAGCTGAACCAGA
GCGCGGCGGCCAAGGCGCGCCTGGAGGAACTTATCAAGAAGTACCCCAATTCGCCCGAAGCCGCCCGGGCCAAGACCTTT
TTGAAGACCAACAAGTAA

Upstream 100 bases:

>100_bases
TGCTGGTGGTTTTTTTGCCGGTTATCGGCGGCATCATCTATATTTTCACCGGGCGCAAAAAAGCCCTGGGAAAAGTGCAA
ATTTGAAAAAAGAGGATATT

Downstream 100 bases:

>100_bases
GACCGGTCCGCCGCCGCGCCGTATAACGGCGCGGCGGTTTGTTATTGCCGTTTTTCAACAGCGCCTGTAACGGCGTAAAG
GTGCATGCATGAGCGAGAAA

Product: tol-pal system protein YbgF

Products: NA

Alternate protein names: TPR Repeat-Containing Protein; TPR Domain-Containing Protein; TPR Domain Protein; Tetratricopeptide Domain-Containing Protein; L-Pal System YbgF; Tetratricopeptide TPR2 Protein; L-Pal System Protein Ybgf; L System Periplasmic Component; Aspartyl/Asparaginyl Beta-Hydroxylase; Membrane Lipoprotein Lipid Attachment Site; Lipoprotein

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MRTFRSLCLVTLACAALPLSACVSGGSSSSGSLSLEQQVQQHDVQLRQMQPSQADAWNQIQALRQELNTVKGQMDDLNNA
GGARALVDRVNRHDEALRQVERSMALNLNLGEPPSAVPAMASSAPAAPQAPSYGLPTYGQAAAGTVAAGSTGYAASVPEG
VQPYGGQAAGASGQVPAQAPDGSTWGQPSPQPQPQVQVPQKDISLALFDAGVNAYNARKYDEAQRSFTDFLKNYKGHNLA
SEAQFYLAECYFQRNQFADAALSYDKVIKEYPKSSSAPGAYLKQGISFSKLNQSAAAKARLEELIKKYPNSPEAARAKTF
LKTNK

Sequences:

>Translated_325_residues
MRTFRSLCLVTLACAALPLSACVSGGSSSSGSLSLEQQVQQHDVQLRQMQPSQADAWNQIQALRQELNTVKGQMDDLNNA
GGARALVDRVNRHDEALRQVERSMALNLNLGEPPSAVPAMASSAPAAPQAPSYGLPTYGQAAAGTVAAGSTGYAASVPEG
VQPYGGQAAGASGQVPAQAPDGSTWGQPSPQPQPQVQVPQKDISLALFDAGVNAYNARKYDEAQRSFTDFLKNYKGHNLA
SEAQFYLAECYFQRNQFADAALSYDKVIKEYPKSSSAPGAYLKQGISFSKLNQSAAAKARLEELIKKYPNSPEAARAKTF
LKTNK
>Mature_325_residues
MRTFRSLCLVTLACAALPLSACVSGGSSSSGSLSLEQQVQQHDVQLRQMQPSQADAWNQIQALRQELNTVKGQMDDLNNA
GGARALVDRVNRHDEALRQVERSMALNLNLGEPPSAVPAMASSAPAAPQAPSYGLPTYGQAAAGTVAAGSTGYAASVPEG
VQPYGGQAAGASGQVPAQAPDGSTWGQPSPQPQPQVQVPQKDISLALFDAGVNAYNARKYDEAQRSFTDFLKNYKGHNLA
SEAQFYLAECYFQRNQFADAALSYDKVIKEYPKSSSAPGAYLKQGISFSKLNQSAAAKARLEELIKKYPNSPEAARAKTF
LKTNK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=101, Percent_Identity=32.6732673267327, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34616; Mature: 34616

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTFRSLCLVTLACAALPLSACVSGGSSSSGSLSLEQQVQQHDVQLRQMQPSQADAWNQI
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
QALRQELNTVKGQMDDLNNAGGARALVDRVNRHDEALRQVERSMALNLNLGEPPSAVPAM
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHH
ASSAPAAPQAPSYGLPTYGQAAAGTVAAGSTGYAASVPEGVQPYGGQAAGASGQVPAQAP
HCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DGSTWGQPSPQPQPQVQVPQKDISLALFDAGVNAYNARKYDEAQRSFTDFLKNYKGHNLA
CCCCCCCCCCCCCCCCCCCHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
SEAQFYLAECYFQRNQFADAALSYDKVIKEYPKSSSAPGAYLKQGISFSKLNQSAAAKAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHH
LEELIKKYPNSPEAARAKTFLKTNK
HHHHHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRTFRSLCLVTLACAALPLSACVSGGSSSSGSLSLEQQVQQHDVQLRQMQPSQADAWNQI
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
QALRQELNTVKGQMDDLNNAGGARALVDRVNRHDEALRQVERSMALNLNLGEPPSAVPAM
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHH
ASSAPAAPQAPSYGLPTYGQAAAGTVAAGSTGYAASVPEGVQPYGGQAAGASGQVPAQAP
HCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DGSTWGQPSPQPQPQVQVPQKDISLALFDAGVNAYNARKYDEAQRSFTDFLKNYKGHNLA
CCCCCCCCCCCCCCCCCCCHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
SEAQFYLAECYFQRNQFADAALSYDKVIKEYPKSSSAPGAYLKQGISFSKLNQSAAAKAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHH
LEELIKKYPNSPEAARAKTFLKTNK
HHHHHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA