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The map label for this gene is fliN [H]

Identifier: 220903654

GI number: 220903654

Start: 453237

End: 453809

Strand: Direct

Name: fliN [H]

Synonym: Ddes_0375

Alternate gene names: 220903654

Gene position: 453237-453809 (Clockwise)

Preceding gene: 220903653

Following gene: 220903655

Centisome position: 15.77

GC content: 62.65

Gene sequence:

>573_bases
ATGTCTCAGGAAGATCAGGACGATCTGGCCGCCCAGTGGGAAGCCGAACTTGCCAAAGAGGCTGAGACCGCCGCCGCTCC
CGCTCCCGATGCGGCCGGAACCGGAGCAGGTACTGCGGCTGCCGGGGCTGATGCCCAGCACCTGGCCGATGAGGCGCTGG
CCGCCCAATGGGCCGCAAGCATGGCCGAAGAAGAGGAAAAACAACCACATCAGTCCTTTGGCGGCGCGGGCGCGGGCATG
GGAGGCCAGGCCACGGATGCCCACTTCAAGGATATGACCGAAATGGCGCGGCAGCCCGGCGATAACAAGCTCAAGCGCGA
GCTGGATTTTATTCTTGATATTCCGCTGGACGTGTCGGCGGAACTGGGGCGCACCCGCCTGCTTATCAACGAGCTGCTCC
AGCTGGGGCAAGGCTCGGTGGTGGAACTGAACAAGCTGGCAGGCGAGCCGCTGGAAGTGTACGTCAACGGCAAGCTGGTG
GCACGCGGCGAGGCCGTGGTCATTAACGAAAAATTCGGCGTGCGCCTTACCGACATCATCAGCCCCATTGAAAGGGTGAA
GCAGCTTGGCTAG

Upstream 100 bases:

>100_bases
GGGGCTGGAACCGGCGTCCAGCAGCTTTGAGACCGCATGCGCTTTCAAAGTTAATCTGTTCTAGAGCAGCTTTTCTTACA
ATGCTCTAAAGAGGTGACCT

Downstream 100 bases:

>100_bases
CCTTGTGCATGCCGTATCCGCGGCGGGCGCTCTGGCCCTTTCCGTCATTGCTCCGGCATCTGGCGTGGCGGGCCAGGCCA
TGCGCGGCACAGTCGGGGCG

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MSQEDQDDLAAQWEAELAKEAETAAAPAPDAAGTGAGTAAAGADAQHLADEALAAQWAASMAEEEEKQPHQSFGGAGAGM
GGQATDAHFKDMTEMARQPGDNKLKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLV
ARGEAVVINEKFGVRLTDIISPIERVKQLG

Sequences:

>Translated_190_residues
MSQEDQDDLAAQWEAELAKEAETAAAPAPDAAGTGAGTAAAGADAQHLADEALAAQWAASMAEEEEKQPHQSFGGAGAGM
GGQATDAHFKDMTEMARQPGDNKLKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLV
ARGEAVVINEKFGVRLTDIISPIERVKQLG
>Mature_189_residues
SQEDQDDLAAQWEAELAKEAETAAAPAPDAAGTGAGTAAAGADAQHLADEALAAQWAASMAEEEEKQPHQSFGGAGAGMG
GQATDAHFKDMTEMARQPGDNKLKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVA
RGEAVVINEKFGVRLTDIISPIERVKQLG

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=84, Percent_Identity=57.1428571428571, Blast_Score=110, Evalue=6e-26,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 20030; Mature: 19898

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQEDQDDLAAQWEAELAKEAETAAAPAPDAAGTGAGTAAAGADAQHLADEALAAQWAAS
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
MAEEEEKQPHQSFGGAGAGMGGQATDAHFKDMTEMARQPGDNKLKRELDFILDIPLDVSA
HHHHHHHCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCH
ELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAVVINEKFGVRLTDII
HHHHHHHHHHHHHHHCCCCEEEHHHHCCCCEEEEECCEEEECCCEEEEECCCCCHHHHHH
SPIERVKQLG
HHHHHHHHCC
>Mature Secondary Structure 
SQEDQDDLAAQWEAELAKEAETAAAPAPDAAGTGAGTAAAGADAQHLADEALAAQWAAS
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
MAEEEEKQPHQSFGGAGAGMGGQATDAHFKDMTEMARQPGDNKLKRELDFILDIPLDVSA
HHHHHHHCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCH
ELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAVVINEKFGVRLTDII
HHHHHHHHHHHHHHHCCCCEEEHHHHCCCCEEEEECCEEEECCCEEEEECCCCCHHHHHH
SPIERVKQLG
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]