Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 220903621

GI number: 220903621

Start: 415791

End: 416444

Strand: Direct

Name: ydhC [H]

Synonym: Ddes_0341

Alternate gene names: 220903621

Gene position: 415791-416444 (Clockwise)

Preceding gene: 220903620

Following gene: 220903624

Centisome position: 14.47

GC content: 57.65

Gene sequence:

>654_bases
TTGAGCCACGTTCAGACCTACAGCGCGCAGGCCATAGATTATATCAAGCAGTGTCTGCTTGACGGAACACTCATGCCCGG
CGACCCCATCCGCGAAACAGAGATCGCGGAGCATCTCGGCATCAGCCGCGGACCCGTGCGCGAAGCCCTGCAAACCCTTC
TGCAGCAGGGGCTTGTGACCGGCCTGCCGCAAAAGGCCAAGCATATCCGCCATCTTACAGCACAGGAAATTGAAGACAGT
TACTGCCTTGGGGGTACGCTGGAAGGGGCCTGCATTGTCCAGTCCATGGATAAGTGGGATGATGCGGCCGTGGCCGAAGT
GAAGACCATACTGGACGAGATGGCGCGGCAAAGCCGCAGCGCTACAGGGCTTTCGAGCATGAGCGTTGTGGATGAAGCGT
TTCACGATGCGCTGCTTTCGCGCTGTTCCAACAGGCTGATGGTCAGCACGGCCCGCAACTCCTGCGCCCATATTTCAAAG
TTTCTCTATTATAAAAGCTGGGATACGCTTTTTTCGCCCCAGGAATTCTATGAGCGCCACACGCTCATTTATGATACCCT
GTGCAGCCGCGACCTACAGCGTATCGAGCGTGTCCTGCGCGAGCATTATGCCGAATCCGGGCGGCGTCTCGGGCTTCAGT
GCGGGCAACGCTAG

Upstream 100 bases:

>100_bases
CCGAAGATTGGGAATATAAATTCCCAACAGTAAATGCTCTATGGACAAGGCATCATAATTTGCTAAGACTATCTCCAGGC
AAACACATGAGGAGCAAACA

Downstream 100 bases:

>100_bases
AGGCTGTTTTTCTGTACTTTTTGCCAGCTTGCTACGTTAAAAAGCCTTTTTACTCCAAGTCGTGCACTGTGAACGTACAC
GTCTTTTGTAAAAAGGCTTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSHVQTYSAQAIDYIKQCLLDGTLMPGDPIRETEIAEHLGISRGPVREALQTLLQQGLVTGLPQKAKHIRHLTAQEIEDS
YCLGGTLEGACIVQSMDKWDDAAVAEVKTILDEMARQSRSATGLSSMSVVDEAFHDALLSRCSNRLMVSTARNSCAHISK
FLYYKSWDTLFSPQEFYERHTLIYDTLCSRDLQRIERVLREHYAESGRRLGLQCGQR

Sequences:

>Translated_217_residues
MSHVQTYSAQAIDYIKQCLLDGTLMPGDPIRETEIAEHLGISRGPVREALQTLLQQGLVTGLPQKAKHIRHLTAQEIEDS
YCLGGTLEGACIVQSMDKWDDAAVAEVKTILDEMARQSRSATGLSSMSVVDEAFHDALLSRCSNRLMVSTARNSCAHISK
FLYYKSWDTLFSPQEFYERHTLIYDTLCSRDLQRIERVLREHYAESGRRLGLQCGQR
>Mature_216_residues
SHVQTYSAQAIDYIKQCLLDGTLMPGDPIRETEIAEHLGISRGPVREALQTLLQQGLVTGLPQKAKHIRHLTAQEIEDSY
CLGGTLEGACIVQSMDKWDDAAVAEVKTILDEMARQSRSATGLSSMSVVDEAFHDALLSRCSNRLMVSTARNSCAHISKF
LYYKSWDTLFSPQEFYERHTLIYDTLCSRDLQRIERVLREHYAESGRRLGLQCGQR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=205, Percent_Identity=21.9512195121951, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24481; Mature: 24350

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHVQTYSAQAIDYIKQCLLDGTLMPGDPIRETEIAEHLGISRGPVREALQTLLQQGLVT
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
GLPQKAKHIRHLTAQEIEDSYCLGGTLEGACIVQSMDKWDDAAVAEVKTILDEMARQSRS
CCCHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ATGLSSMSVVDEAFHDALLSRCSNRLMVSTARNSCAHISKFLYYKSWDTLFSPQEFYERH
HCCHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
TLIYDTLCSRDLQRIERVLREHYAESGRRLGLQCGQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHCCCC
>Mature Secondary Structure 
SHVQTYSAQAIDYIKQCLLDGTLMPGDPIRETEIAEHLGISRGPVREALQTLLQQGLVT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
GLPQKAKHIRHLTAQEIEDSYCLGGTLEGACIVQSMDKWDDAAVAEVKTILDEMARQSRS
CCCHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ATGLSSMSVVDEAFHDALLSRCSNRLMVSTARNSCAHISKFLYYKSWDTLFSPQEFYERH
HCCHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
TLIYDTLCSRDLQRIERVLREHYAESGRRLGLQCGQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]