Click here to switch to the map view.

The map label for this gene is srpC [H]

Identifier: 220903590

GI number: 220903590

Start: 379240

End: 380835

Strand: Direct

Name: srpC [H]

Synonym: Ddes_0309

Alternate gene names: 220903590

Gene position: 379240-380835 (Clockwise)

Preceding gene: 220903589

Following gene: 220903591

Centisome position: 13.2

GC content: 63.1

Gene sequence:

>1596_bases
ATGAGTTCCATCAGTAATGCCGGTCGCATGCGTCTGACGGGGGCAGTGTTTGTCCTGTCGGTATTCATGCTTTCGGCCTG
CTCCCTTGCGCCGCGCTACGAACGGCCTGAAATGGATATGCCCGCCCAGTGGCGCACGGTGGATATGGGCGCCGCCCCGC
TGAACACTGACTGGTGGAACCGCTTCAATGATCCGGTGCTTACCGCCCTGGTGGACGAGGCGCTGAAGAACAACCAGGAT
ATTGCCGAATCCCTTGCCAAGATCGATTCAGCGGCCTCGCAGGTGGGTATAGCCACTGCGGATCTGCTGCCCTCGGTCAG
CGGCTCGGCTTCGTCCATGGCTCAGGGGGCTTCGGAAAAAACGCCCAACACCATGCCCTTTGACAAGAGCGGTCTTTCCC
GCACCACGGCCACCAATCAGGCCGCGCTCAGCGCCTCGTGGGAGTTGGACCTCTGGGGCAAGAACCGCAATAACTACACC
ATGCTCAGCGATGTGCTCATGAGCACGGTCATCGGGCATGAGGCCCTGCGTCTTTCGGTGGCAGGGCAGACGGCCCAGAG
CTACTTTGCCCTGCTGGCCCTGGACATGCAGCTGGATACGGCCCGCCGTACGCTTAAAACCCGCGAAGATGCCTTCAGCA
TCTACAGCAGCCGTTACAAGCAGGGTGACATTACCGAGCTTGACTGGCAGCGCGCCCGTGCAGAGGTTGAAATCGCCCGT
GCCCAGGTGCACACCAGCACCGTGGCCGTGGACAGGGCCGAAGCCGGACTGGCCGTGCTGCTCGGGCGTTCGCCCCGTGA
TATTATGGAACGCGGCATGCCGCGCGGGCAGGCCATCGGCATGCTGCCGTCGCCCCCCGTGCTGCCTGAAGGTCTGCCTT
CCGACCTGCTGCAGCGCAGGCCGGACGTGCGTGCCGCCGAATTCATGCTCATGGCCAATAACGCAAATATCGGCGTGGCC
CGTGCCCAGTTCTTCCCCTCGGTGTCCCTTACGGGTATGCTGGGTACGGTCAGTGCGGCCGTGGGCAGCCTGTTTACCGG
CCCTGCCGGAGCCTGGAGCTACGGCGTCACCGGTTCCATGCCCCTGCTGGATTTCGGCCGCACCTGGTACAACGTCAAGG
ATGCCGAAGCACGTAAAAAGGCTTCTGTGGCCGTATACCGCAAAACCGTGCAGACGGCGTTTGAAGACATGCGCACATCG
CTGACCGCCCAGCGCGAGGCCGACGCCATCGTGCGCAGCATGCAGATCCAGGTGGAAAGCCTGCGCCGTGCCACTACCAT
TGCCCGTCTGCAGTACGACAACGGCTATACGGACTACCTGACCGTTCTGGATGCGGAACGCCAGCTTTTTGCTGCCGAAC
TGCAACTGGCATCGGCCCTGCGTGACCGCCTGGACAACGTCGTGAGCGTTTGCATGGCCCTTGGCGGCGGCTGGAACGAC
CCCGGCGCCAGCCCGAGCTTTCCCGTGGTCAATACCGAAAAACTGCTGAATCAGGAAACAAGCGCCGGGGCATCCGGCAA
GTCTTCGGGCAAGGCCGCGGCCGAATCCGCGCCTGCCGCGCCTGAGGCCAGACCACAGGGTGGCGTGAGCCTGTAG

Upstream 100 bases:

>100_bases
CGTATTTCTTTAAGATAATCATGCAGATATCACTGAAAATACAGGGCAAGACAGATCCCAACGCCGGTAAGGACTTTACC
GGGGATGGACAGGAGGATCT

Downstream 100 bases:

>100_bases
GGCTGCCCGGCAGACTGCGCTATGAATGTAATGCCCCCCGGCCAAAAGGCCGGGGGGCTTCGTTTTTTGCGTATTCACTT
TTTGTTTTGAACCGGGCTGT

Product: NodT family RND efflux system outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 530

Protein sequence:

>531_residues
MSSISNAGRMRLTGAVFVLSVFMLSACSLAPRYERPEMDMPAQWRTVDMGAAPLNTDWWNRFNDPVLTALVDEALKNNQD
IAESLAKIDSAASQVGIATADLLPSVSGSASSMAQGASEKTPNTMPFDKSGLSRTTATNQAALSASWELDLWGKNRNNYT
MLSDVLMSTVIGHEALRLSVAGQTAQSYFALLALDMQLDTARRTLKTREDAFSIYSSRYKQGDITELDWQRARAEVEIAR
AQVHTSTVAVDRAEAGLAVLLGRSPRDIMERGMPRGQAIGMLPSPPVLPEGLPSDLLQRRPDVRAAEFMLMANNANIGVA
RAQFFPSVSLTGMLGTVSAAVGSLFTGPAGAWSYGVTGSMPLLDFGRTWYNVKDAEARKKASVAVYRKTVQTAFEDMRTS
LTAQREADAIVRSMQIQVESLRRATTIARLQYDNGYTDYLTVLDAERQLFAAELQLASALRDRLDNVVSVCMALGGGWND
PGASPSFPVVNTEKLLNQETSAGASGKSSGKAAAESAPAAPEARPQGGVSL

Sequences:

>Translated_531_residues
MSSISNAGRMRLTGAVFVLSVFMLSACSLAPRYERPEMDMPAQWRTVDMGAAPLNTDWWNRFNDPVLTALVDEALKNNQD
IAESLAKIDSAASQVGIATADLLPSVSGSASSMAQGASEKTPNTMPFDKSGLSRTTATNQAALSASWELDLWGKNRNNYT
MLSDVLMSTVIGHEALRLSVAGQTAQSYFALLALDMQLDTARRTLKTREDAFSIYSSRYKQGDITELDWQRARAEVEIAR
AQVHTSTVAVDRAEAGLAVLLGRSPRDIMERGMPRGQAIGMLPSPPVLPEGLPSDLLQRRPDVRAAEFMLMANNANIGVA
RAQFFPSVSLTGMLGTVSAAVGSLFTGPAGAWSYGVTGSMPLLDFGRTWYNVKDAEARKKASVAVYRKTVQTAFEDMRTS
LTAQREADAIVRSMQIQVESLRRATTIARLQYDNGYTDYLTVLDAERQLFAAELQLASALRDRLDNVVSVCMALGGGWND
PGASPSFPVVNTEKLLNQETSAGASGKSSGKAAAESAPAAPEARPQGGVSL
>Mature_530_residues
SSISNAGRMRLTGAVFVLSVFMLSACSLAPRYERPEMDMPAQWRTVDMGAAPLNTDWWNRFNDPVLTALVDEALKNNQDI
AESLAKIDSAASQVGIATADLLPSVSGSASSMAQGASEKTPNTMPFDKSGLSRTTATNQAALSASWELDLWGKNRNNYTM
LSDVLMSTVIGHEALRLSVAGQTAQSYFALLALDMQLDTARRTLKTREDAFSIYSSRYKQGDITELDWQRARAEVEIARA
QVHTSTVAVDRAEAGLAVLLGRSPRDIMERGMPRGQAIGMLPSPPVLPEGLPSDLLQRRPDVRAAEFMLMANNANIGVAR
AQFFPSVSLTGMLGTVSAAVGSLFTGPAGAWSYGVTGSMPLLDFGRTWYNVKDAEARKKASVAVYRKTVQTAFEDMRTSL
TAQREADAIVRSMQIQVESLRRATTIARLQYDNGYTDYLTVLDAERQLFAAELQLASALRDRLDNVVSVCMALGGGWNDP
GASPSFPVVNTEKLLNQETSAGASGKSSGKAAAESAPAAPEARPQGGVSL

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=460, Percent_Identity=31.7391304347826, Blast_Score=213, Evalue=3e-56,
Organism=Escherichia coli, GI2367348, Length=484, Percent_Identity=24.7933884297521, Blast_Score=117, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 57108; Mature: 56977

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSISNAGRMRLTGAVFVLSVFMLSACSLAPRYERPEMDMPAQWRTVDMGAAPLNTDWWN
CCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHH
RFNDPVLTALVDEALKNNQDIAESLAKIDSAASQVGIATADLLPSVSGSASSMAQGASEK
HCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHCCCCCC
TPNTMPFDKSGLSRTTATNQAALSASWELDLWGKNRNNYTMLSDVLMSTVIGHEALRLSV
CCCCCCCCCCCCCCCCCCCCHHEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEEEEE
AGQTAQSYFALLALDMQLDTARRTLKTREDAFSIYSSRYKQGDITELDWQRARAEVEIAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
AQVHTSTVAVDRAEAGLAVLLGRSPRDIMERGMPRGQAIGMLPSPPVLPEGLPSDLLQRR
HHHHHHHHEEEHHCCCEEEEECCCCHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHCC
PDVRAAEFMLMANNANIGVARAQFFPSVSLTGMLGTVSAAVGSLFTGPAGAWSYGVTGSM
CCCCCEEEEEEECCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PLLDFGRTWYNVKDAEARKKASVAVYRKTVQTAFEDMRTSLTAQREADAIVRSMQIQVES
CHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRATTIARLQYDNGYTDYLTVLDAERQLFAAELQLASALRDRLDNVVSVCMALGGGWND
HHHHHHHHEEEECCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PGASPSFPVVNTEKLLNQETSAGASGKSSGKAAAESAPAAPEARPQGGVSL
CCCCCCCCCCCHHHHHCCHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSISNAGRMRLTGAVFVLSVFMLSACSLAPRYERPEMDMPAQWRTVDMGAAPLNTDWWN
CCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHH
RFNDPVLTALVDEALKNNQDIAESLAKIDSAASQVGIATADLLPSVSGSASSMAQGASEK
HCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHCCCCCC
TPNTMPFDKSGLSRTTATNQAALSASWELDLWGKNRNNYTMLSDVLMSTVIGHEALRLSV
CCCCCCCCCCCCCCCCCCCCHHEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEEEEE
AGQTAQSYFALLALDMQLDTARRTLKTREDAFSIYSSRYKQGDITELDWQRARAEVEIAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
AQVHTSTVAVDRAEAGLAVLLGRSPRDIMERGMPRGQAIGMLPSPPVLPEGLPSDLLQRR
HHHHHHHHEEEHHCCCEEEEECCCCHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHCC
PDVRAAEFMLMANNANIGVARAQFFPSVSLTGMLGTVSAAVGSLFTGPAGAWSYGVTGSM
CCCCCEEEEEEECCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PLLDFGRTWYNVKDAEARKKASVAVYRKTVQTAFEDMRTSLTAQREADAIVRSMQIQVES
CHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRATTIARLQYDNGYTDYLTVLDAERQLFAAELQLASALRDRLDNVVSVCMALGGGWND
HHHHHHHHEEEECCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PGASPSFPVVNTEKLLNQETSAGASGKSSGKAAAESAPAAPEARPQGGVSL
CCCCCCCCCCCHHHHHCCHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]