Definition Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome.
Accession NC_011883
Length 2,873,437

Click here to switch to the map view.

The map label for this gene is ycbK [C]

Identifier: 220903529

GI number: 220903529

Start: 294737

End: 295120

Strand: Direct

Name: ycbK [C]

Synonym: Ddes_0248

Alternate gene names: 220903529

Gene position: 294737-295120 (Clockwise)

Preceding gene: 220903528

Following gene: 220903530

Centisome position: 10.26

GC content: 56.25

Gene sequence:

>384_bases
ATGCCTAAGCTGTTCCGTCATTTCAACGAATATTCCGGGCCGTGGCCGTGGCCAAATTTCGCGCCAAAAGAAGTTTCCTG
CTCCCATTGTGGCGAAATGTATCTGGACTCTGAAAGCATGGATGCCCTGCAGGAACTGCGGGAATCCCTCGGGCGTCCTA
TTGTGATTACGTCGGGCCATCGCTGCAGCGCGCATAACAAGGCCGTTGGCGGGGTGGAGAGCTCGCAGCATCTCAAAATA
GCTTTTGATTGCGCCTGCCCCGCCAATGAGCAGGACTCGTTTGTAAAAAAGGCTGTGGATGCTGGATTTCGCGGTATTGG
CCGCTACCCCCGGCGCGGCTTTGTGCATCTTGATATGGGCCCGCGTCGCCAGTGGACAGGGTAA

Upstream 100 bases:

>100_bases
TCCTCGTCACCAGCCCAGACTTTGTACACATCAACGGCGTGCCTTATCTGGGCGCGTCGGAAACCGAGGGCATTGTTACC
CCCAGTTAAGGATGCACGTT

Downstream 100 bases:

>100_bases
CAGAATGAAAGGTGCTGCCATGAAATATCTTTGCGCCGCCTTGGGTGTGCTGCTTGTACTCGTCCTCGTGGCCTTTTTCT
TTACCAACGATGCCCTGACC

Product: peptidase M15A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MPKLFRHFNEYSGPWPWPNFAPKEVSCSHCGEMYLDSESMDALQELRESLGRPIVITSGHRCSAHNKAVGGVESSQHLKI
AFDCACPANEQDSFVKKAVDAGFRGIGRYPRRGFVHLDMGPRRQWTG

Sequences:

>Translated_127_residues
MPKLFRHFNEYSGPWPWPNFAPKEVSCSHCGEMYLDSESMDALQELRESLGRPIVITSGHRCSAHNKAVGGVESSQHLKI
AFDCACPANEQDSFVKKAVDAGFRGIGRYPRRGFVHLDMGPRRQWTG
>Mature_126_residues
PKLFRHFNEYSGPWPWPNFAPKEVSCSHCGEMYLDSESMDALQELRESLGRPIVITSGHRCSAHNKAVGGVESSQHLKIA
FDCACPANEQDSFVKKAVDAGFRGIGRYPRRGFVHLDMGPRRQWTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14280; Mature: 14149

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKLFRHFNEYSGPWPWPNFAPKEVSCSHCGEMYLDSESMDALQELRESLGRPIVITSGH
CCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHEECCHHHHHHHHHHHHCCCCEEEECCC
RCSAHNKAVGGVESSQHLKIAFDCACPANEQDSFVKKAVDAGFRGIGRYPRRGFVHLDMG
CCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
PRRQWTG
CCCCCCC
>Mature Secondary Structure 
PKLFRHFNEYSGPWPWPNFAPKEVSCSHCGEMYLDSESMDALQELRESLGRPIVITSGH
CHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHEECCHHHHHHHHHHHHCCCCEEEECCC
RCSAHNKAVGGVESSQHLKIAFDCACPANEQDSFVKKAVDAGFRGIGRYPRRGFVHLDMG
CCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
PRRQWTG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA