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The map label for this gene is ihfA [H]

Identifier: 220903465

GI number: 220903465

Start: 228424

End: 228711

Strand: Reverse

Name: ihfA [H]

Synonym: Ddes_0181

Alternate gene names: 220903465

Gene position: 228711-228424 (Counterclockwise)

Preceding gene: 220903469

Following gene: 220903464

Centisome position: 7.96

GC content: 49.65

Gene sequence:

>288_bases
ATGAAGAAAACTCTGACCAAAGCGGACATCGTGGAGGCCATCTACGAAGAAACCGACAAAAACCGCGTTGACGTGAAAAA
CGTGGTTGAAAAACTGCTGGAAATCATGAAAACGGCCATTAAAAAGGACCGTGCCCTGCTGATCAGCGGTTTCGGCAAGT
TTGAATGCTATGACAAGGCCTCACGCAAAGGGCGTAACCCCAAGACTGATGAGACCATTACCCTGCCCCCGCGCAAAGTT
ATGGTCTTTCGTCTGTCGCGGAAGTTTCGCTCAGAACTGAATCCCTAG

Upstream 100 bases:

>100_bases
TTCATGTGAAGCGAGCCTTTGTTTACCATTTGGCCATACCTGTCAGGACCATGTTTGTGACAGACATACCAGCGCCACAA
TACGCGCCGGAGAACTCACA

Downstream 100 bases:

>100_bases
CCGCGCCGCAACGCCTGCGCCTTCACGGCGGACATCCGCTGGGCTCCGCAGCGAAGGCTCTTGCGTTTCTTTTACCGGCC
AGCCGTTGCACGGGCAGCAT

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MKKTLTKADIVEAIYEETDKNRVDVKNVVEKLLEIMKTAIKKDRALLISGFGKFECYDKASRKGRNPKTDETITLPPRKV
MVFRLSRKFRSELNP

Sequences:

>Translated_95_residues
MKKTLTKADIVEAIYEETDKNRVDVKNVVEKLLEIMKTAIKKDRALLISGFGKFECYDKASRKGRNPKTDETITLPPRKV
MVFRLSRKFRSELNP
>Mature_95_residues
MKKTLTKADIVEAIYEETDKNRVDVKNVVEKLLEIMKTAIKKDRALLISGFGKFECYDKASRKGRNPKTDETITLPPRKV
MVFRLSRKFRSELNP

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=88, Percent_Identity=37.5, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11031; Mature: 11031

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLTKADIVEAIYEETDKNRVDVKNVVEKLLEIMKTAIKKDRALLISGFGKFECYDKA
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHEEECCCCCCHHHHHH
SRKGRNPKTDETITLPPRKVMVFRLSRKFRSELNP
HHCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKTLTKADIVEAIYEETDKNRVDVKNVVEKLLEIMKTAIKKDRALLISGFGKFECYDKA
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHEEECCCCCCHHHHHH
SRKGRNPKTDETITLPPRKVMVFRLSRKFRSELNP
HHCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA