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The map label for this gene is ytqB [H]

Identifier: 220903359

GI number: 220903359

Start: 95095

End: 95772

Strand: Direct

Name: ytqB [H]

Synonym: Ddes_0073

Alternate gene names: 220903359

Gene position: 95095-95772 (Clockwise)

Preceding gene: 220903358

Following gene: 220903360

Centisome position: 3.31

GC content: 67.7

Gene sequence:

>678_bases
GTGCGGCGACTTTCTTTGCTTGAGCATCTGGCCCACGCGGCTCTTGAACGCGCTTTGGTGACCTGCGCTGCGGACGCATC
TTCTGTGCCGCATGGCGGGCAAGGCGCACAGGCTGCCGTGGGTGCGGCGCCCGGTCTCCTGCTGGTGGATGCCACGGCCG
GCAACGGGCATGACAGCCTGTTCCTGCTTGGCGCAGCACCCCGCAACGCGCTGCTGCTGGCTATGGATGTGCAGGCTCAG
GCCGTGGCAGCTACGGGCGCCCTGCTTGCGGCTCACGGTTTTGCGCATGCGGCGCGGGTGCTGCACACGGGTCACGAATG
CCTGGCAGACGTGCTGGCGGCGCTTGCGCCGGAAGACCGGCAGCGGCCCCTGGCGTGTGTTGTTTTTAATCTGGGCTGGC
TGCCCGGCGGCAACAAGGATCTGGTCACCACCCCTGCTACATCGCTGCCTGCCCTTGAGGCTGCGCTGGAAGCTCTGGCC
CCCGGCGGCTGCATCAGCCTGCATTGCTACACCGGGCATGAAGGCGGTGCGGAAGAGGCGGCCGCCCTTGAGGCGTGGGT
ACGCAGCCTGCCGCCACGGCGCTGGCGTGTGCTGGCGCTGGCCGACGCCAACAGGGAACGGGCTGCCGAAAGCCTGTTGC
TGGTGGAGCGTCTGCCGGTGAGAAAAAATAGGGCGTGA

Upstream 100 bases:

>100_bases
CAGGGGCTGGCCGGCGGCGCGGCTGTCATGAATACTGTGGACAAGACGAAAAAAGCGCCCGGATGCAGGGCATGTCGCAT
CCGGCAAGGTTGCTTACCCG

Downstream 100 bases:

>100_bases
ACTGACCCTGCGAGCGCGGGCGGCAACGGTGCGAGATAATTTTTTGTACAAATACTGGCGGACAATGTGGGCCGCAGGCG
GAGGCGGTAAAAGTTTTTAA

Product: putative rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MRRLSLLEHLAHAALERALVTCAADASSVPHGGQGAQAAVGAAPGLLLVDATAGNGHDSLFLLGAAPRNALLLAMDVQAQ
AVAATGALLAAHGFAHAARVLHTGHECLADVLAALAPEDRQRPLACVVFNLGWLPGGNKDLVTTPATSLPALEAALEALA
PGGCISLHCYTGHEGGAEEAAALEAWVRSLPPRRWRVLALADANRERAAESLLLVERLPVRKNRA

Sequences:

>Translated_225_residues
MRRLSLLEHLAHAALERALVTCAADASSVPHGGQGAQAAVGAAPGLLLVDATAGNGHDSLFLLGAAPRNALLLAMDVQAQ
AVAATGALLAAHGFAHAARVLHTGHECLADVLAALAPEDRQRPLACVVFNLGWLPGGNKDLVTTPATSLPALEAALEALA
PGGCISLHCYTGHEGGAEEAAALEAWVRSLPPRRWRVLALADANRERAAESLLLVERLPVRKNRA
>Mature_225_residues
MRRLSLLEHLAHAALERALVTCAADASSVPHGGQGAQAAVGAAPGLLLVDATAGNGHDSLFLLGAAPRNALLLAMDVQAQ
AVAATGALLAAHGFAHAARVLHTGHECLADVLAALAPEDRQRPLACVVFNLGWLPGGNKDLVTTPATSLPALEAALEALA
PGGCISLHCYTGHEGGAEEAAALEAWVRSLPPRRWRVLALADANRERAAESLLLVERLPVRKNRA

Specific function: Unknown

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010719 [H]

Pfam domain/function: PF06962 rRNA_methylase [H]

EC number: NA

Molecular weight: Translated: 23220; Mature: 23220

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLSLLEHLAHAALERALVTCAADASSVPHGGQGAQAAVGAAPGLLLVDATAGNGHDSL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCE
FLLGAAPRNALLLAMDVQAQAVAATGALLAAHGFAHAARVLHTGHECLADVLAALAPEDR
EEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
QRPLACVVFNLGWLPGGNKDLVTTPATSLPALEAALEALAPGGCISLHCYTGHEGGAEEA
CCCEEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCHHHH
AALEAWVRSLPPRRWRVLALADANRERAAESLLLVERLPVRKNRA
HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRRLSLLEHLAHAALERALVTCAADASSVPHGGQGAQAAVGAAPGLLLVDATAGNGHDSL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCE
FLLGAAPRNALLLAMDVQAQAVAATGALLAAHGFAHAARVLHTGHECLADVLAALAPEDR
EEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
QRPLACVVFNLGWLPGGNKDLVTTPATSLPALEAALEALAPGGCISLHCYTGHEGGAEEA
CCCEEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCHHHH
AALEAWVRSLPPRRWRVLALADANRERAAESLLLVERLPVRKNRA
HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]