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The map label for this gene is yibD [C]

Identifier: 220903355

GI number: 220903355

Start: 89548

End: 90456

Strand: Reverse

Name: yibD [C]

Synonym: Ddes_0069

Alternate gene names: 220903355

Gene position: 90456-89548 (Counterclockwise)

Preceding gene: 220903356

Following gene: 220903354

Centisome position: 3.15

GC content: 62.93

Gene sequence:

>909_bases
ATGCGCGCCCATATCGGCGTTGTTACCTGGAACCGGCTGGACCTTACCCGCCGGTGCCTCACAAGCCTGCTTGCGCAGAC
GCCGCCCGGCTACAGCCTTACCGTGACAGACAACGGCAGCACAGACGGCACGCCCCGGTATCTGAAAGAGCTGGCCGACG
CACACCCGCACATGCGCCTGCACCTGCTAAAACGCAATATGGGCGTGGCCGTGGCCTCCAACCTGGCCTGGGGCGATGCG
GGCGCGGCGGACTGTTTTGTCAAGCTGGATAACGACGTGGAGATTTGCGACCCGCACTGGCTTGAGCGCCTTACGGGCAT
GCTGGCCGCCGACGGCCGCGTAGGCATGGCGGGCTACCGCCTGTGTCCGTGGCATGAGGGCACGCCCCTGCGGCTGGCTG
ACAGCACGCCCGCCCTCAGCGTAGCGTGCTGCAACGGGGCCTGCGCCTGCATCCCCCGCGCCGTGCATGAAAAACTGGGC
TTCTGGAACGAGAGCTACGGCCGCTACGGCTATGAAGACCTGGAATACAGCTGGCGTGCACGGCAGGCGGGGTACCTGCT
GGCCTACGCCCTTCAGGAAGACGCTGTGCGTCATCTTGGCGCGGAACCGGAGCAGCGCGATCCCAACATGGAAAACGGCA
AGCTTTCCAGCCGCACGGCCGCCCTTTCGGGAACCAAGGCATACCTCATGTATCTGCTGCTGTTTGAAAAGGGCATCATT
CCGCTTAAAGTCGGCCGCAAATATCTGCCTGTGGAAGGACCGGACGGAACCGTCTTCAGCCTCAACCCGGAACACAAAGC
CCTGCAGCGCCTGCTTACCCGCCTGGTGCAGACTGTCGAAACCAGCCAGACCGGCGATATTTCCTGCCTGGACCTGAGTG
CGTGGCAGAAAAAAGGAAGATTGTCATGA

Upstream 100 bases:

>100_bases
GGCGTCGTCACCTCCGGCGGCGGCATTGTATGCAATAACGAACCGCTGGAAAAACTCGGCGGCGGTTTTGACCACTTTGA
TGCCGGGCAGGACGCCTGAC

Downstream 100 bases:

>100_bases
CCGCACCCGGACACTGCCCGGACAAGGCCTCTCTTTCTGCTTCAGCCGGGGAGCTGACGCCGCATATGGTAGAAAACCTG
CGCTCCGTCTGCCGCGACGC

Product: family 2 glycosyl transferase

Products: NA

Alternate protein names: Glycosyltransferase; Glycosyl Transferase Group 1/2 Family Protein; Glycosyl Transferase Group 2 Family; Family 2 Glycosyl Transferase; Glycosyl Transferase

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MRAHIGVVTWNRLDLTRRCLTSLLAQTPPGYSLTVTDNGSTDGTPRYLKELADAHPHMRLHLLKRNMGVAVASNLAWGDA
GAADCFVKLDNDVEICDPHWLERLTGMLAADGRVGMAGYRLCPWHEGTPLRLADSTPALSVACCNGACACIPRAVHEKLG
FWNESYGRYGYEDLEYSWRARQAGYLLAYALQEDAVRHLGAEPEQRDPNMENGKLSSRTAALSGTKAYLMYLLLFEKGII
PLKVGRKYLPVEGPDGTVFSLNPEHKALQRLLTRLVQTVETSQTGDISCLDLSAWQKKGRLS

Sequences:

>Translated_302_residues
MRAHIGVVTWNRLDLTRRCLTSLLAQTPPGYSLTVTDNGSTDGTPRYLKELADAHPHMRLHLLKRNMGVAVASNLAWGDA
GAADCFVKLDNDVEICDPHWLERLTGMLAADGRVGMAGYRLCPWHEGTPLRLADSTPALSVACCNGACACIPRAVHEKLG
FWNESYGRYGYEDLEYSWRARQAGYLLAYALQEDAVRHLGAEPEQRDPNMENGKLSSRTAALSGTKAYLMYLLLFEKGII
PLKVGRKYLPVEGPDGTVFSLNPEHKALQRLLTRLVQTVETSQTGDISCLDLSAWQKKGRLS
>Mature_302_residues
MRAHIGVVTWNRLDLTRRCLTSLLAQTPPGYSLTVTDNGSTDGTPRYLKELADAHPHMRLHLLKRNMGVAVASNLAWGDA
GAADCFVKLDNDVEICDPHWLERLTGMLAADGRVGMAGYRLCPWHEGTPLRLADSTPALSVACCNGACACIPRAVHEKLG
FWNESYGRYGYEDLEYSWRARQAGYLLAYALQEDAVRHLGAEPEQRDPNMENGKLSSRTAALSGTKAYLMYLLLFEKGII
PLKVGRKYLPVEGPDGTVFSLNPEHKALQRLLTRLVQTVETSQTGDISCLDLSAWQKKGRLS

Specific function: Unknown

COG id: COG1216

COG function: function code R; Predicted glycosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 33416; Mature: 33416

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAHIGVVTWNRLDLTRRCLTSLLAQTPPGYSLTVTDNGSTDGTPRYLKELADAHPHMRL
CCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEE
HLLKRNMGVAVASNLAWGDAGAADCFVKLDNDVEICDPHWLERLTGMLAADGRVGMAGYR
HHHHHCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE
LCPWHEGTPLRLADSTPALSVACCNGACACIPRAVHEKLGFWNESYGRYGYEDLEYSWRA
ECCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCHHHHH
RQAGYLLAYALQEDAVRHLGAEPEQRDPNMENGKLSSRTAALSGTKAYLMYLLLFEKGII
HCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCE
PLKVGRKYLPVEGPDGTVFSLNPEHKALQRLLTRLVQTVETSQTGDISCLDLSAWQKKGR
EEECCCEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
LS
CC
>Mature Secondary Structure
MRAHIGVVTWNRLDLTRRCLTSLLAQTPPGYSLTVTDNGSTDGTPRYLKELADAHPHMRL
CCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEE
HLLKRNMGVAVASNLAWGDAGAADCFVKLDNDVEICDPHWLERLTGMLAADGRVGMAGYR
HHHHHCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE
LCPWHEGTPLRLADSTPALSVACCNGACACIPRAVHEKLGFWNESYGRYGYEDLEYSWRA
ECCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCHHHHH
RQAGYLLAYALQEDAVRHLGAEPEQRDPNMENGKLSSRTAALSGTKAYLMYLLLFEKGII
HCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCE
PLKVGRKYLPVEGPDGTVFSLNPEHKALQRLLTRLVQTVETSQTGDISCLDLSAWQKKGR
EEECCCEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
LS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA