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The map label for this gene is ywhC [H]

Identifier: 220903319

GI number: 220903319

Start: 43946

End: 44620

Strand: Reverse

Name: ywhC [H]

Synonym: Ddes_0033

Alternate gene names: 220903319

Gene position: 44620-43946 (Counterclockwise)

Preceding gene: 220903320

Following gene: 220903318

Centisome position: 1.55

GC content: 59.26

Gene sequence:

>675_bases
ATGTTTAATATAGATATATCCCAGGCCCTGAACACCCTGTCCATCGCGGCGGTTCCCGCCCTGCTGGGCATCATTCTGCA
CGAAGTGGCCCACGGCTGGGTTGCCGCCCGCTGCGGCGACCCCACAGCCCGCATGATGGGGCGGCTGACCCTCAACCCGC
TGCCGCACATTGACCCTATGGGGCTTATGGTCTTCGGACTGACAAGCCTCAGCGGCTCCTTTGTTTTCGGCTGGGCCAAA
CCCGTGCCCGTCAATCCGCGCTATTTTCGCGATCCGGCCAAGGGCATGATGCTGGTGGCTCTGGCGGGTCCTCTGACCAA
CTTTATTCTGGCGGGGATTTTCGGCGTGCTGCTGCGGCTGACACTGAACTTTTTTCCGCCCATTGAGTGGCAGTACAGCA
ATGTCTACATCTTTGCCCTCAAATCCATGCAGGCGGGGGTCATCATCAATTTCGGCCTGGGCTGGCTTAACCTGCTGCCC
ATTCCACCGCTGGACGGCAGCAAGGTTGTAGCCTATTTTCTGCCATTCAATGCGGCCTTGCGCTACCTGAGCGTCGAACG
CTTCGGCTTTATCATCCTGCTTGGCCTGCTGTTTACCGGCCTGCTGGGCATGGTACTGGGTCCGCTGGTGAGCGGCAGCG
CCCGTGGCCTGCTGTCTCTGCTGGGCATTTTATAA

Upstream 100 bases:

>100_bases
AGGTGCTGGTGCGCAAGGTGGCGTCTTCCGGCTAACCCGCCCAACCTTCACCGGCGCAACCCCGCTTGCTGCGCCGCAGG
GGAAATGGTACCCGCCAGCC

Downstream 100 bases:

>100_bases
TTTCAAAGGACTGTTTTTCATGAGCAAAGAACTGCGCACTGTTTCCGGCATGCGGCCCACCGGCCCCCTGCACCTCGGCC
ATTACTTCGGCGTGCTGAAA

Product: peptidase M50

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MFNIDISQALNTLSIAAVPALLGIILHEVAHGWVAARCGDPTARMMGRLTLNPLPHIDPMGLMVFGLTSLSGSFVFGWAK
PVPVNPRYFRDPAKGMMLVALAGPLTNFILAGIFGVLLRLTLNFFPPIEWQYSNVYIFALKSMQAGVIINFGLGWLNLLP
IPPLDGSKVVAYFLPFNAALRYLSVERFGFIILLGLLFTGLLGMVLGPLVSGSARGLLSLLGIL

Sequences:

>Translated_224_residues
MFNIDISQALNTLSIAAVPALLGIILHEVAHGWVAARCGDPTARMMGRLTLNPLPHIDPMGLMVFGLTSLSGSFVFGWAK
PVPVNPRYFRDPAKGMMLVALAGPLTNFILAGIFGVLLRLTLNFFPPIEWQYSNVYIFALKSMQAGVIINFGLGWLNLLP
IPPLDGSKVVAYFLPFNAALRYLSVERFGFIILLGLLFTGLLGMVLGPLVSGSARGLLSLLGIL
>Mature_224_residues
MFNIDISQALNTLSIAAVPALLGIILHEVAHGWVAARCGDPTARMMGRLTLNPLPHIDPMGLMVFGLTSLSGSFVFGWAK
PVPVNPRYFRDPAKGMMLVALAGPLTNFILAGIFGVLLRLTLNFFPPIEWQYSNVYIFALKSMQAGVIINFGLGWLNLLP
IPPLDGSKVVAYFLPFNAALRYLSVERFGFIILLGLLFTGLLGMVLGPLVSGSARGLLSLLGIL

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24196; Mature: 24196

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNIDISQALNTLSIAAVPALLGIILHEVAHGWVAARCGDPTARMMGRLTLNPLPHIDPM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCCCCCH
GLMVFGLTSLSGSFVFGWAKPVPVNPRYFRDPAKGMMLVALAGPLTNFILAGIFGVLLRL
HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
TLNFFPPIEWQYSNVYIFALKSMQAGVIINFGLGWLNLLPIPPLDGSKVVAYFLPFNAAL
HHHCCCCCCEEECCEEEEEEECCCCCEEEEECCCHHHCCCCCCCCCCCEEEEEECHHHHH
RYLSVERFGFIILLGLLFTGLLGMVLGPLVSGSARGLLSLLGIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure
MFNIDISQALNTLSIAAVPALLGIILHEVAHGWVAARCGDPTARMMGRLTLNPLPHIDPM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCCCCCH
GLMVFGLTSLSGSFVFGWAKPVPVNPRYFRDPAKGMMLVALAGPLTNFILAGIFGVLLRL
HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
TLNFFPPIEWQYSNVYIFALKSMQAGVIINFGLGWLNLLPIPPLDGSKVVAYFLPFNAAL
HHHCCCCCCEEECCEEEEEEECCCCCEEEEECCCHHHCCCCCCCCCCCEEEEEECHHHHH
RYLSVERFGFIILLGLLFTGLLGMVLGPLVSGSARGLLSLLGIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]