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The map label for this gene is yrvN [H]

Identifier: 21911250

GI number: 21911250

Start: 1729987

End: 1731255

Strand: Direct

Name: yrvN [H]

Synonym: SpyM3_1714

Alternate gene names: 21911250

Gene position: 1729987-1731255 (Clockwise)

Preceding gene: 21911249

Following gene: 21911251

Centisome position: 91.03

GC content: 43.58

Gene sequence:

>1269_bases
ATGCCTGATCACTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCCAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGTATCGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAAACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAATCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATAGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGACATTAT
GATGTGCTATCAGCCCTCCAAAAAGCTATTCGCGGCTCCGATGTCAATGCCAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCTCCTAAATCAAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Upstream 100 bases:

>100_bases
CAGAAAGCATCGGAACTCCTGATGGCATGACTATGATTGCTAACTTCATCGCAGCTATTCCCCGTTAATCCCATCCCCCA
AAAGAAAGGAGGACAGTTAC

Downstream 100 bases:

>100_bases
CTGCTAGTTTTAAAAATCGCAACCGATTTCAAAAATCGATAATTTTGCTTGAAAAAATTTTAAAAAGTGGTATTATAAAA
GTACAGAAACATTGCTGTGG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MPDHLALRMRPKTISEVIGQKHLVGQGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Sequences:

>Translated_422_residues
MPDHLALRMRPKTISEVIGQKHLVGQGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD
>Mature_421_residues
PDHLALRMRPKTISEVIGQKHLVGQGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATIDSKKRLQ
EIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQL
AISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQRSYITMDKNGDGHYD
VLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVVI
DLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEAN
ETGKYERALGSNKERIDKLSD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=436, Percent_Identity=38.5321100917431, Blast_Score=263, Evalue=3e-70,
Organism=Homo sapiens, GI18426904, Length=436, Percent_Identity=34.8623853211009, Blast_Score=216, Evalue=3e-56,
Organism=Escherichia coli, GI1787119, Length=401, Percent_Identity=36.9077306733167, Blast_Score=261, Evalue=5e-71,
Organism=Saccharomyces cerevisiae, GI6324111, Length=428, Percent_Identity=34.8130841121495, Blast_Score=222, Evalue=1e-58,
Organism=Saccharomyces cerevisiae, GI6324039, Length=218, Percent_Identity=27.5229357798165, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46601; Mature: 46469

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDHLALRMRPKTISEVIGQKHLVGQGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIA
CCCCEEEEECCHHHHHHHCCHHCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
GTTKYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTI
CCHHHEEEEECCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCHHHHHHHEECCCCE
IMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQLAISDKERGFPFLVTIDDEA
EEEEECCCCCCEEECHHHHCCEEEEEECCCCCCHHHHHHHEEECCCCCCCEEEEEECCCC
LDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQRSYITMDKNGDGHY
EEEEEEECCCHHHHHHCCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHEEEEECCCCCCH
DVLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTA
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCCCCCCEEEEEH
LDAAQRIGFPEARILIANVVIDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHY
HHHHHHCCCCHHHHHHEEEHEEEEECCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCC
AGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEANETGKYERALGSNKERIDKL
CCCCCCCCCHHCCCCCCCHHHHHHHHCCCHHHHCCEEECCCCCCCHHHHHCCCHHHHHHC
SD
CC
>Mature Secondary Structure 
PDHLALRMRPKTISEVIGQKHLVGQGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIA
CCCEEEEECCHHHHHHHCCHHCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
GTTKYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTI
CCHHHEEEEECCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCHHHHHHHEECCCCE
IMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQLAISDKERGFPFLVTIDDEA
EEEEECCCCCCEEECHHHHCCEEEEEECCCCCCHHHHHHHEEECCCCCCCEEEEEECCCC
LDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQRSYITMDKNGDGHY
EEEEEEECCCHHHHHHCCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHEEEEECCCCCCH
DVLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTA
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCCCCCCEEEEEH
LDAAQRIGFPEARILIANVVIDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHY
HHHHHHCCCCHHHHHHEEEHEEEEECCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCC
AGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEANETGKYERALGSNKERIDKL
CCCCCCCCCHHCCCCCCCHHHHHHHHCCCHHHHCCEEECCCCCCCHHHHHCCCHHHHHHC
SD
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]