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The map label for this gene is yncI [H]

Identifier: 21911240

GI number: 21911240

Start: 1719526

End: 1720659

Strand: Direct

Name: yncI [H]

Synonym: SpyM3_1704

Alternate gene names: 21911240

Gene position: 1719526-1720659 (Clockwise)

Preceding gene: 21911234

Following gene: 21911241

Centisome position: 90.48

GC content: 37.92

Gene sequence:

>1134_bases
ATGATTGATTTTATTATTTCTATTGATGATTGCGCAGTTGAATTGGATAGTCGTCAATCTTGGAAAATTCGCTCCCCCTT
ATCAACCATTCTATTTCTTGTCTTCGTTTGTCAGTTAGCTGGCATTGAAACCTGGAAGGAGATGGAAGATTTTATTGAAA
TGAATGAACCATTGTTTGCGACCTACGTTGATTTGAGTGAAGGTTGTCCGTCTCATGATACCTTAGAGCGTGTGATTAGT
CTTGTTAATTCAGAGCGTTTAAAAGAGCTTAAAGTTCAATTTGAGCAATCATTGACAAGCTTAGATGCCGTTCATCAACT
GATTTCAGTGGAGGGTAAAACGATTCGAGACAATCGAGGTAAAAATCAGAAGCCTGTTCATATTGTAACGGCTTATGATG
GGGGTCATCATCTTAGTTTGGGACAGGTAGCGGTTGAGGAGAAAAGTAATGAAATTGTTGCCATTCCTCAGTTATTGCGG
ACAATTGATATCCGTAAAAGCATTGTAACGATAGACGCAATGGGCACGCAGACGGCTATCGTTGATACGATTATAAAAGG
TAAAGCAGACTATTGCTTAGCCGTCAAAGGAAATCAAAAAACACTTTATGATGCTATTGCTCTTTATTTTAGTGATGTCA
ACTTATTGGAAGAACTCCAAGAAAATGCACAGTATTATCAGACTGTTGAAAAATCTAGGGGACAGATTGAAGTTAGAGAA
TACTGGGTGTCTTCCGATATCAAATGGTTGTGTCAAAACCATCCCAAATGGCATAAGTTACGTGGTATTGGGATGACTCG
TAACATGATTGATAAGGATGGTCAGCTGAGTCAAGAGAATCGTTATTTTATCTTTAGCTTTAAGCCGGATGTCCTCACAT
TTGCCAATTGTGTACGAGGTCATTGGCAGATAGAGAGTATGCACTGGTTATTGGACGTTGTTTATCATGAAGATCATCAT
CAGACATTGGATAAAAGAGCCGCATTTAACCTAAATCTTATCCGAAAAATGTGCTTATATTTTCTCAAAGTGATGGTATT
TCCTAAAAAAGACCTCAGTTATCGTCGCAAACAACGGTATATTTCTGTCCATTTGGAAGATTATTTAGTCCAATTATTTG
GAGAAAGAGGCTAA

Upstream 100 bases:

>100_bases
GGTTTCACGCCAAACGCATGAAGAAACTTTTGTTTTCAGAAAACTAGATTCATAATGACAAAATCAATCAAAGTAGTACA
CTATAGATGAGGTGACTACG

Downstream 100 bases:

>100_bases
GCAGATGATTGATTTAAAAAGGAATCTTTTCAAAATTGATGTCCGGGCACAAAAGGATGATGAGAAAGTTTTCATGCGTA
CGGCGTGGCTAGGTTTCTTC

Product: IS1548 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MIDFIISIDDCAVELDSRQSWKIRSPLSTILFLVFVCQLAGIETWKEMEDFIEMNEPLFATYVDLSEGCPSHDTLERVIS
LVNSERLKELKVQFEQSLTSLDAVHQLISVEGKTIRDNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLR
TIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQKTLYDAIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVRE
YWVSSDIKWLCQNHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSFKPDVLTFANCVRGHWQIESMHWLLDVVYHEDHH
QTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQLFGERG

Sequences:

>Translated_377_residues
MIDFIISIDDCAVELDSRQSWKIRSPLSTILFLVFVCQLAGIETWKEMEDFIEMNEPLFATYVDLSEGCPSHDTLERVIS
LVNSERLKELKVQFEQSLTSLDAVHQLISVEGKTIRDNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLR
TIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQKTLYDAIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVRE
YWVSSDIKWLCQNHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSFKPDVLTFANCVRGHWQIESMHWLLDVVYHEDHH
QTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQLFGERG
>Mature_377_residues
MIDFIISIDDCAVELDSRQSWKIRSPLSTILFLVFVCQLAGIETWKEMEDFIEMNEPLFATYVDLSEGCPSHDTLERVIS
LVNSERLKELKVQFEQSLTSLDAVHQLISVEGKTIRDNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLR
TIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQKTLYDAIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVRE
YWVSSDIKWLCQNHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSFKPDVLTFANCVRGHWQIESMHWLLDVVYHEDHH
QTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQLFGERG

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1787733, Length=370, Percent_Identity=34.0540540540541, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1789896, Length=371, Percent_Identity=33.4231805929919, Blast_Score=181, Evalue=9e-47,
Organism=Escherichia coli, GI1786924, Length=232, Percent_Identity=36.6379310344828, Blast_Score=142, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 43797; Mature: 43797

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFIISIDDCAVELDSRQSWKIRSPLSTILFLVFVCQLAGIETWKEMEDFIEMNEPLFA
CEEEEEECCHHEEEECCCCCCEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEE
TYVDLSEGCPSHDTLERVISLVNSERLKELKVQFEQSLTSLDAVHQLISVEGKTIRDNRG
EEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCC
KNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAI
CCCCCEEEEEEECCCCEEEHHHHHHHCCCCCEEEHHHHHHHHHHHHHEEEEECCCCHHHH
VDTIIKGKADYCLAVKGNQKTLYDAIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVRE
HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEH
YWVSSDIKWLCQNHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSFKPDVLTFANCVRG
HHHCCCHHHHHCCCCCHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHCC
HWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRY
CEEEHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ISVHLEDYLVQLFGERG
EEEHHHHHHHHHHCCCC
>Mature Secondary Structure
MIDFIISIDDCAVELDSRQSWKIRSPLSTILFLVFVCQLAGIETWKEMEDFIEMNEPLFA
CEEEEEECCHHEEEECCCCCCEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEE
TYVDLSEGCPSHDTLERVISLVNSERLKELKVQFEQSLTSLDAVHQLISVEGKTIRDNRG
EEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCC
KNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAI
CCCCCEEEEEEECCCCEEEHHHHHHHCCCCCEEEHHHHHHHHHHHHHEEEEECCCCHHHH
VDTIIKGKADYCLAVKGNQKTLYDAIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVRE
HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEH
YWVSSDIKWLCQNHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSFKPDVLTFANCVRG
HHHCCCHHHHHCCCCCHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHCC
HWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRY
CEEEHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ISVHLEDYLVQLFGERG
EEEHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]