Click here to switch to the map view.

The map label for this gene is dnaD [H]

Identifier: 21910675

GI number: 21910675

Start: 1167244

End: 1167630

Strand: Reverse

Name: dnaD [H]

Synonym: SpyM3_1139

Alternate gene names: 21910675

Gene position: 1167630-1167244 (Counterclockwise)

Preceding gene: 21910676

Following gene: 21910674

Centisome position: 61.44

GC content: 36.43

Gene sequence:

>387_bases
ATGGACGAAAAAAAGCTTTTTGAAAATTTCCAATTAACTTTTGGACGGATGATATCGCCATTTGAAATCGAAGATATTCA
AAAGTGGATTCACGAAGATAACATGCCAATTGAAGTTGTCAACCTTGCCTTAAGAGAAGCGGTAGAAAACAACAAAATCA
GTTGGAAGTATATCAATAAAATCTTAGTTGATTGGTATAAATCTGGAGATACGACAGTAGAAAAGGTCAGAGACAGGTTG
CAACGGTTTGACGATAGTAAAAAACAACGAAGTGTAACTACCTCAAACGTCCCAAGCTGGTCGAATCCAGACTACAAAGA
ACCAGATTTAAAAGAATTTGCTCTAGGAAGCATGGACGGTATAGAAGATGGATCAGGAGATTTTTAA

Upstream 100 bases:

>100_bases
AACAAATTAGCCAACTAATAAATACTAACTTATAAATAAATACTAAATAACAATAAATACTAACAGATAATAAGCATCAT
CATCAACATCAGGAGGAGCT

Downstream 100 bases:

>100_bases
TTTTTTTAACAAACAAATCAAAAAAGATTTTGGTAAAACGGCGAGTAAAGAGACTTTTGCTAAGTTTGCTAGTTACTGCG
CCGAAGGAATCGAAAAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MDEKKLFENFQLTFGRMISPFEIEDIQKWIHEDNMPIEVVNLALREAVENNKISWKYINKILVDWYKSGDTTVEKVRDRL
QRFDDSKKQRSVTTSNVPSWSNPDYKEPDLKEFALGSMDGIEDGSGDF

Sequences:

>Translated_128_residues
MDEKKLFENFQLTFGRMISPFEIEDIQKWIHEDNMPIEVVNLALREAVENNKISWKYINKILVDWYKSGDTTVEKVRDRL
QRFDDSKKQRSVTTSNVPSWSNPDYKEPDLKEFALGSMDGIEDGSGDF
>Mature_128_residues
MDEKKLFENFQLTFGRMISPFEIEDIQKWIHEDNMPIEVVNLALREAVENNKISWKYINKILVDWYKSGDTTVEKVRDRL
QRFDDSKKQRSVTTSNVPSWSNPDYKEPDLKEFALGSMDGIEDGSGDF

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 15025; Mature: 15025

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEKKLFENFQLTFGRMISPFEIEDIQKWIHEDNMPIEVVNLALREAVENNKISWKYINK
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
ILVDWYKSGDTTVEKVRDRLQRFDDSKKQRSVTTSNVPSWSNPDYKEPDLKEFALGSMDG
HHHHHHCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
IEDGSGDF
CCCCCCCC
>Mature Secondary Structure
MDEKKLFENFQLTFGRMISPFEIEDIQKWIHEDNMPIEVVNLALREAVENNKISWKYINK
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
ILVDWYKSGDTTVEKVRDRLQRFDDSKKQRSVTTSNVPSWSNPDYKEPDLKEFALGSMDG
HHHHHHCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
IEDGSGDF
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]