Click here to switch to the map view.

The map label for this gene is dnaD [H]

Identifier: 21910177

GI number: 21910177

Start: 702829

End: 703512

Strand: Direct

Name: dnaD [H]

Synonym: SpyM3_0641

Alternate gene names: 21910177

Gene position: 702829-703512 (Clockwise)

Preceding gene: 21910176

Following gene: 21910178

Centisome position: 36.98

GC content: 35.53

Gene sequence:

>684_bases
ATGAGTTTTTTAGAACATTATAAGTCAGGTAATTTGGTTATCCCAAGTGCCTTGCTTTTTCATTACAAAGATCTTTTTAA
GAGCTCAGATGATTTTTTGGTCTGGCAGTTTTTCTATCTTCAAAATACGACAAAGCGAGATGACTTAGCACCCAGTCAAA
TTGCTCATGCGCTTGGAAAATCAGTTGCTGATATTAATAAAATCATTTCATCTTTGACTAGTCAAGGGCTTTTAGATATG
CGGACAATTGAACTTACTGGAGAAATTGAAATTATTTTTGATGCGAGTCCTGTGTTAGCCAAGTTAGATCAATTGTTTGT
CAGTCAAACGGCAACTGAAATTGACAAACAAGAAACACCAAACCATTTCAAACGATTAGTTGATGAATTTGAACGTGAAT
TAGGACGATTCTTGAGTCCTTTTGAGTTAGAAGATCTTGAAAAAACGCTTCGTGATGATAAAACAGATCCTGATTTGATA
CGAGAAGCTTTAAAAGAAGCTGTCTTCAACGGCAAAACAAATTGGAAATATATCCAGGCTATCTTACGTAATTGGCGAAA
AGAAGGTATTGTTAATCTTCGACAAGTAGAAGAACGTAGACGTGTTAGAGAAGGCGAAGATCTTTCTCAAGTGACGATAT
CAGAGGATTTTCTATCTGCGATGAATTTATGGAGTGATTCATGA

Upstream 100 bases:

>100_bases
TAATGCAGTTTCCTGGATAAGCACATTAATCAGCATCTGATTAGGGGATTTAAAGTAGTAAAGGCTATAGATTCGATTTT
AGCCTTTTGATTGAGGGATT

Downstream 100 bases:

>100_bases
GAATTGGAAAAGCAAGATTAGCAAAAGTCCTGACCATCATTGGTCAAATGTTTCCTGAGGCTAAGGGAGAGTTAGACTGG
GAAACACCTTTTCAATTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSFLEHYKSGNLVIPSALLFHYKDLFKSSDDFLVWQFFYLQNTTKRDDLAPSQIAHALGKSVADINKIISSLTSQGLLDM
RTIELTGEIEIIFDASPVLAKLDQLFVSQTATEIDKQETPNHFKRLVDEFERELGRFLSPFELEDLEKTLRDDKTDPDLI
REALKEAVFNGKTNWKYIQAILRNWRKEGIVNLRQVEERRRVREGEDLSQVTISEDFLSAMNLWSDS

Sequences:

>Translated_227_residues
MSFLEHYKSGNLVIPSALLFHYKDLFKSSDDFLVWQFFYLQNTTKRDDLAPSQIAHALGKSVADINKIISSLTSQGLLDM
RTIELTGEIEIIFDASPVLAKLDQLFVSQTATEIDKQETPNHFKRLVDEFERELGRFLSPFELEDLEKTLRDDKTDPDLI
REALKEAVFNGKTNWKYIQAILRNWRKEGIVNLRQVEERRRVREGEDLSQVTISEDFLSAMNLWSDS
>Mature_226_residues
SFLEHYKSGNLVIPSALLFHYKDLFKSSDDFLVWQFFYLQNTTKRDDLAPSQIAHALGKSVADINKIISSLTSQGLLDMR
TIELTGEIEIIFDASPVLAKLDQLFVSQTATEIDKQETPNHFKRLVDEFERELGRFLSPFELEDLEKTLRDDKTDPDLIR
EALKEAVFNGKTNWKYIQAILRNWRKEGIVNLRQVEERRRVREGEDLSQVTISEDFLSAMNLWSDS

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 26347; Mature: 26216

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLEHYKSGNLVIPSALLFHYKDLFKSSDDFLVWQFFYLQNTTKRDDLAPSQIAHALGK
CCHHHHHCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
SVADINKIISSLTSQGLLDMRTIELTGEIEIIFDASPVLAKLDQLFVSQTATEIDKQETP
HHHHHHHHHHHHHHCCCHHHEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
NHFKRLVDEFERELGRFLSPFELEDLEKTLRDDKTDPDLIREALKEAVFNGKTNWKYIQA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
ILRNWRKEGIVNLRQVEERRRVREGEDLSQVTISEDFLSAMNLWSDS
HHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SFLEHYKSGNLVIPSALLFHYKDLFKSSDDFLVWQFFYLQNTTKRDDLAPSQIAHALGK
CHHHHHCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
SVADINKIISSLTSQGLLDMRTIELTGEIEIIFDASPVLAKLDQLFVSQTATEIDKQETP
HHHHHHHHHHHHHHCCCHHHEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
NHFKRLVDEFERELGRFLSPFELEDLEKTLRDDKTDPDLIREALKEAVFNGKTNWKYIQA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
ILRNWRKEGIVNLRQVEERRRVREGEDLSQVTISEDFLSAMNLWSDS
HHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]