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The map label for this gene is rimM [H]

Identifier: 21910109

GI number: 21910109

Start: 631284

End: 631802

Strand: Direct

Name: rimM [H]

Synonym: SpyM3_0573

Alternate gene names: 21910109

Gene position: 631284-631802 (Clockwise)

Preceding gene: 21910108

Following gene: 21910110

Centisome position: 33.22

GC content: 37.76

Gene sequence:

>519_bases
ATGGAATATTTTAATGTTGGAAAAATTGTCAACACGCAAGGCCTGCAAGGAGAGATGCGCGTGTTGTCTGTCAGTGATTT
TGCTGAGGAACGCTTTAAAAAAGGCTCACAATTAGCTTTATTTGATGATAAAGATCGGTTTGTTCAAGAAGTGACAATTG
TTAGTCACCGTAAACAAAAGCATTTTGATATTATCAAATTGAAAGACATGTATCATATTAATGCTATTGAAAAGTACAAG
GGATACACTTTAAAGGTCTCAAAAGACAATCAAGGGGATTTACAAGAAGGAGAATTTTATTACCATCAGATTATTGGCAT
GGCTGTTTATGAAAAGGACCGGTTGATTGGCTATGTCAAGGAAATCTTGCAGCCAGGTGCTAATGATGTTTGGGTAGTGA
AACGCCAAGGAAAACGAGACTTGCTCTTACCATATATTCCCCCAGTAGTTCTTAACGTAGATGTTCCTAACAAGCGCGTG
GATGTTGAATTGATGGAAGGCTTAGACGATGAAGATTGA

Upstream 100 bases:

>100_bases
AGGTAATTTGGTTCTGAAAAAGAAGTGTCTATCAAACTTTAGAATCAAGAGAGGTCGCTAAAGTGACGTGAGATAAAGAG
TTAACGATTTAGGAGCTACC

Downstream 100 bases:

>100_bases
TATTTTAACCCTTTTTCCTGAAATGTTTGCTCCCCTAGAACATTCCATTGTAGGCAAGGCAAAAGAAAAAGGTCTGTTAG
ACATTCACTACCATAACTTT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MEYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQKHFDIIKLKDMYHINAIEKYK
GYTLKVSKDNQGDLQEGEFYYHQIIGMAVYEKDRLIGYVKEILQPGANDVWVVKRQGKRDLLLPYIPPVVLNVDVPNKRV
DVELMEGLDDED

Sequences:

>Translated_172_residues
MEYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQKHFDIIKLKDMYHINAIEKYK
GYTLKVSKDNQGDLQEGEFYYHQIIGMAVYEKDRLIGYVKEILQPGANDVWVVKRQGKRDLLLPYIPPVVLNVDVPNKRV
DVELMEGLDDED
>Mature_172_residues
MEYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQKHFDIIKLKDMYHINAIEKYK
GYTLKVSKDNQGDLQEGEFYYHQIIGMAVYEKDRLIGYVKEILQPGANDVWVVKRQGKRDLLLPYIPPVVLNVDVPNKRV
DVELMEGLDDED

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20026; Mature: 20026

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQK
CCCCCCCCEECCCCCCCCEEEEEHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCC
HFDIIKLKDMYHINAIEKYKGYTLKVSKDNQGDLQEGEFYYHQIIGMAVYEKDRLIGYVK
CCCEEEECCEEEECHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EILQPGANDVWVVKRQGKRDLLLPYIPPVVLNVDVPNKRVDVELMEGLDDED
HHHCCCCCCEEEEEECCCCCEECCCCCCEEEEECCCCCEECHHHHCCCCCCC
>Mature Secondary Structure
MEYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQK
CCCCCCCCEECCCCCCCCEEEEEHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCC
HFDIIKLKDMYHINAIEKYKGYTLKVSKDNQGDLQEGEFYYHQIIGMAVYEKDRLIGYVK
CCCEEEECCEEEECHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EILQPGANDVWVVKRQGKRDLLLPYIPPVVLNVDVPNKRVDVELMEGLDDED
HHHCCCCCCEEEEEECCCCCEECCCCCCEEEEECCCCCEECHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]