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The map label for this gene is yvoA [H]

Identifier: 21910003

GI number: 21910003

Start: 514878

End: 515600

Strand: Direct

Name: yvoA [H]

Synonym: SpyM3_0467

Alternate gene names: 21910003

Gene position: 514878-515600 (Clockwise)

Preceding gene: 21910002

Following gene: 21910004

Centisome position: 27.09

GC content: 37.62

Gene sequence:

>723_bases
ATGCCAAAAGAACAACCACTCTATCTACAGATTGTTGATGACTTGGAAGTGAAAATCAAAAAGAGCATGACAGAAAACGA
TAAGTTGTTGTCAGAACGAGAATTAAGTGACCTTTACGGTGTTAGTCGTATCACGATTAGACTGGCTCTTAAGGAATTGG
AATTACGAGACTTAATTTATAAAAAGCAGGGCAAGGGGACTTATGTTTCAGGAATCAAAGAACCTGTCACTGATTTATCA
AGTACTTACAGCTTTACAGAGCAAATGAAAAAAGTGGGGAAAACTCCTAAAACAGAGATTCTTTCTTTTGAACAGTATCA
GGTAACACCTTACTTGTCTGGTCTCTTAGAGTTTGATCTCGATACAGAAGTTTTTGAATTAGAACGCCTAAGGATTGCAG
ATGATATGCCCTTGATGTTTGAACGATCCTATATTCCTGCGCAGCTTTTTCAGGGGTTAAGCATTGCGGACTTGAAGCGT
AAAGCTTTGTACGATATCTTTGCAAAGGACTATCAAGAGACAATCCGTCTTGCAGAAGAAGAGTTTTATGCCAGCATTGC
CTTGGACTATGAAGCAGACCTTTTGGGAATCAAAAAAGGAGATCCTGTCTTACATATTATTCGTAAAACTTATAACGATA
AAAATATTTTGATCGAATTTACTTTCAGTATTGCAAGAGCAGACCAGTTTAGGTATAGGGTACAACATCACCCCAATGGT
TAA

Upstream 100 bases:

>100_bases
TTGTGGAGTAAAAAAATTTAATAATTCTCAACATTAATTTGACGGACACTTATGACTATAATATACTTTAAGTGGTTATA
ACAAGTTAGAGGTGAATAAG

Downstream 100 bases:

>100_bases
AGAAATGGGAGGTTAATACATGTTTACAAAAACGCAGGAAGCTTTGGAGGCTCTTGGTGCAGCTATTACTACCAAGGAAA
TTAAACAAGAACCCCGTTTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MPKEQPLYLQIVDDLEVKIKKSMTENDKLLSERELSDLYGVSRITIRLALKELELRDLIYKKQGKGTYVSGIKEPVTDLS
STYSFTEQMKKVGKTPKTEILSFEQYQVTPYLSGLLEFDLDTEVFELERLRIADDMPLMFERSYIPAQLFQGLSIADLKR
KALYDIFAKDYQETIRLAEEEFYASIALDYEADLLGIKKGDPVLHIIRKTYNDKNILIEFTFSIARADQFRYRVQHHPNG

Sequences:

>Translated_240_residues
MPKEQPLYLQIVDDLEVKIKKSMTENDKLLSERELSDLYGVSRITIRLALKELELRDLIYKKQGKGTYVSGIKEPVTDLS
STYSFTEQMKKVGKTPKTEILSFEQYQVTPYLSGLLEFDLDTEVFELERLRIADDMPLMFERSYIPAQLFQGLSIADLKR
KALYDIFAKDYQETIRLAEEEFYASIALDYEADLLGIKKGDPVLHIIRKTYNDKNILIEFTFSIARADQFRYRVQHHPNG
>Mature_239_residues
PKEQPLYLQIVDDLEVKIKKSMTENDKLLSERELSDLYGVSRITIRLALKELELRDLIYKKQGKGTYVSGIKEPVTDLSS
TYSFTEQMKKVGKTPKTEILSFEQYQVTPYLSGLLEFDLDTEVFELERLRIADDMPLMFERSYIPAQLFQGLSIADLKRK
ALYDIFAKDYQETIRLAEEEFYASIALDYEADLLGIKKGDPVLHIIRKTYNDKNILIEFTFSIARADQFRYRVQHHPNG

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=232, Percent_Identity=27.1551724137931, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790118, Length=232, Percent_Identity=25.4310344827586, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1786950, Length=230, Percent_Identity=25.6521739130435, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082252, Length=200, Percent_Identity=26.5, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27970; Mature: 27838

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKEQPLYLQIVDDLEVKIKKSMTENDKLLSERELSDLYGVSRITIRLALKELELRDLIY
CCCCCCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
KKQGKGTYVSGIKEPVTDLSSTYSFTEQMKKVGKTPKTEILSFEQYQVTPYLSGLLEFDL
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEECHHEEECHHHHHHHHCCC
DTEVFELERLRIADDMPLMFERSYIPAQLFQGLSIADLKRKALYDIFAKDYQETIRLAEE
CCHHHHHHHHHHCCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EFYASIALDYEADLLGIKKGDPVLHIIRKTYNDKNILIEFTFSIARADQFRYRVQHHPNG
HHHEEEEECCCCCEEEECCCCHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHEEECCCCCC
>Mature Secondary Structure 
PKEQPLYLQIVDDLEVKIKKSMTENDKLLSERELSDLYGVSRITIRLALKELELRDLIY
CCCCCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
KKQGKGTYVSGIKEPVTDLSSTYSFTEQMKKVGKTPKTEILSFEQYQVTPYLSGLLEFDL
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEECHHEEECHHHHHHHHCCC
DTEVFELERLRIADDMPLMFERSYIPAQLFQGLSIADLKRKALYDIFAKDYQETIRLAEE
CCHHHHHHHHHHCCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EFYASIALDYEADLLGIKKGDPVLHIIRKTYNDKNILIEFTFSIARADQFRYRVQHHPNG
HHHEEEEECCCCCEEEECCCCHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]