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The map label for this gene is ybeY [C]

Identifier: 21909871

GI number: 21909871

Start: 375644

End: 376171

Strand: Direct

Name: ybeY [C]

Synonym: SpyM3_0335

Alternate gene names: 21909871

Gene position: 375644-376171 (Clockwise)

Preceding gene: 21909870

Following gene: 21909872

Centisome position: 19.77

GC content: 39.77

Gene sequence:

>528_bases
GTGGGCAGCCCTTCCCTAACAATTAACCTTATGTATATCGAGATGATTGACGAAACGGGACAAGTTTCGCAAGAGATTAT
GGAGCAAACACTTGATTTGCTCAATTTTGCTGCTCAAAAGACGGGCAAAGAAGAAAAAGAAATGTCTGTGACCTTTGTGA
CCAATGAAAGAAGTCATGAACTCAACTTAGAATACCGAGATACTGATCGTCCAACAGATGTGATTTCTCTAGAATACAAG
CCAGAAACGCCTATTTTATTTAGTCAAGAGGATTTGGCTGCTGATCCTAGTTTGGCAGAGATGATGGCAGAGTTTGATGC
TTATATTGGCGAATTGTTTATTTCTATTGACAAGGCGCGTGAGCAGTCCCAAGAATATGGGCACTCTTTTGAGCGTGAAA
TGGGATTTTTAGCTGTTCATGGATTCTTACATATTAATGGGTATGATCACTACACCCTTGAAGAAGAAAAAGAGATGTTT
ACCTTACAGGAAGAGATTTTGACTGCTTATGGCCTTACACGACAATAA

Upstream 100 bases:

>100_bases
TAAGGGGCTTGTGGTATAATGGGTAAATAACAAATGCTGATTGAAAGGATAAGGGAAATTATCTGTCAGATAATAATGGG
TGCCCAACATACCAAATGAG

Downstream 100 bases:

>100_bases
TACCACCAAACGGAAATGGAAAAACAGAACCATTACCTCAAGCCTGGAGTTTGCCTTGACAGGGGTTTTCACAGCTTTTA
AGGAAGAACGCAATCTCAGA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MGSPSLTINLMYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHELNLEYRDTDRPTDVISLEYK
PETPILFSQEDLAADPSLAEMMAEFDAYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMF
TLQEEILTAYGLTRQ

Sequences:

>Translated_175_residues
MGSPSLTINLMYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHELNLEYRDTDRPTDVISLEYK
PETPILFSQEDLAADPSLAEMMAEFDAYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMF
TLQEEILTAYGLTRQ
>Mature_174_residues
GSPSLTINLMYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHELNLEYRDTDRPTDVISLEYKP
ETPILFSQEDLAADPSLAEMMAEFDAYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFT
LQEEILTAYGLTRQ

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=129, Percent_Identity=34.8837209302326, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 20212; Mature: 20081

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSPSLTINLMYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHE
CCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCCCE
LNLEYRDTDRPTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELFISIDKAR
EEEEECCCCCCCCEEEEEECCCCCEEECCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGLTRQ
HHHHHHCHHHHHHCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GSPSLTINLMYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHE
CCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCCCE
LNLEYRDTDRPTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELFISIDKAR
EEEEECCCCCCCCEEEEEECCCCCEEECCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGLTRQ
HHHHHHCHHHHHHCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA