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The map label for this gene is xerD

Identifier: 21909802

GI number: 21909802

Start: 305734

End: 306480

Strand: Direct

Name: xerD

Synonym: SpyM3_0266

Alternate gene names: NA

Gene position: 305734-306480 (Clockwise)

Preceding gene: 21909801

Following gene: 21909803

Centisome position: 16.09

GC content: 32.66

Gene sequence:

>747_bases
ATGAAGAGTTATATTGAACCTTTTATTGCTAGCAAGGCTTTATCTCAAAATAGTCAAAAAGCTTATCGATACGATTTGCA
ACAGTTTTGTCAACTGGTTGGTGAACGTGTCAATCAAGACAAACTATTACTTTATCAAAATAGCATAGCTAACCTAAGTT
TATCTGCAAAAAAACGCAAATTATCAACAGCTAATCAATTCTTATATTACTTGTATCAAATAAAGTATTTAAATAGCTAT
TTTCGATTAACAGATACCATGAAAGTGATGCGGACTGAGAAGCAGCAAGCTGCTATTATTAATACTGATATTTTCTATCA
AAAAACTCCTTTTGTGTGGGGGCAATTAATCAGCTTATTAATATTGGAGCTGGGTTTAACTCCAAGTGAAGTAGCTGGTA
TTGAAGTAGCTAACTTGGATTTAAGTTTTCAAATGTTGACGCTAAAGACTAAAAAAGGTGTGCGTGTATTACCTTTGTCG
CAAATACTAATCCCTTTTTTAGAACAACAACTCATTGGCAAAGAAGTCTATCTTTTTGAACATCGAGGCATCCCTTTTTC
AAGACAATGGTTTTTTAATCACCTAAAAACCTTTGTTCGAAGTATTGGTTATGAAGGATTAACTGCTCAAAAATTACGAG
AGCAATTTATTTTGAAAGAAAAACTAGCTGGTAAATCGATAATAGAACTTAGCGATATTCTTGGGCTGAAAAGCCCTGTG
ACCTTAGAAAAATACTACAAATCATAA

Upstream 100 bases:

>100_bases
GAGCGAATCGCTTTGTTGGGATTATTACGCGAAAATCTATATTAAAGGCTGTCAACAGTCTTTTACATGATTTTACAGAT
GATTACACGATTATAAAAAA

Downstream 100 bases:

>100_bases
TGGATATAAAACTTAAAGATTTTGAAGGTCCTCTTGATTTACTCTTGCACTTGGTATCACAGTACAAAGTTGACATCTAC
GAGGTTCCTATTGTTGAGGT

Product: site-specific tyrosine recombinase XerD-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKSYIEPFIASKALSQNSQKAYRYDLQQFCQLVGERVNQDKLLLYQNSIANLSLSAKKRKLSTANQFLYYLYQIKYLNSY
FRLTDTMKVMRTEKQQAAIINTDIFYQKTPFVWGQLISLLILELGLTPSEVAGIEVANLDLSFQMLTLKTKKGVRVLPLS
QILIPFLEQQLIGKEVYLFEHRGIPFSRQWFFNHLKTFVRSIGYEGLTAQKLREQFILKEKLAGKSIIELSDILGLKSPV
TLEKYYKS

Sequences:

>Translated_248_residues
MKSYIEPFIASKALSQNSQKAYRYDLQQFCQLVGERVNQDKLLLYQNSIANLSLSAKKRKLSTANQFLYYLYQIKYLNSY
FRLTDTMKVMRTEKQQAAIINTDIFYQKTPFVWGQLISLLILELGLTPSEVAGIEVANLDLSFQMLTLKTKKGVRVLPLS
QILIPFLEQQLIGKEVYLFEHRGIPFSRQWFFNHLKTFVRSIGYEGLTAQKLREQFILKEKLAGKSIIELSDILGLKSPV
TLEKYYKS
>Mature_248_residues
MKSYIEPFIASKALSQNSQKAYRYDLQQFCQLVGERVNQDKLLLYQNSIANLSLSAKKRKLSTANQFLYYLYQIKYLNSY
FRLTDTMKVMRTEKQQAAIINTDIFYQKTPFVWGQLISLLILELGLTPSEVAGIEVANLDLSFQMLTLKTKKGVRVLPLS
QILIPFLEQQLIGKEVYLFEHRGIPFSRQWFFNHLKTFVRSIGYEGLTAQKLREQFILKEKLAGKSIIELSDILGLKSPV
TLEKYYKS

Specific function: Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD-like subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR020876 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 28804; Mature: 28804

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSYIEPFIASKALSQNSQKAYRYDLQQFCQLVGERVNQDKLLLYQNSIANLSLSAKKRK
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHH
LSTANQFLYYLYQIKYLNSYFRLTDTMKVMRTEKQQAAIINTDIFYQKTPFVWGQLISLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHEEECCCHHHHHHHHHH
ILELGLTPSEVAGIEVANLDLSFQMLTLKTKKGVRVLPLSQILIPFLEQQLIGKEVYLFE
HHHHCCCHHHHCCEEEEECCCEEEEEEEECCCCCEEECHHHHHHHHHHHHHCCCEEEEEE
HRGIPFSRQWFFNHLKTFVRSIGYEGLTAQKLREQFILKEKLAGKSIIELSDILGLKSPV
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
TLEKYYKS
HHHHHHCC
>Mature Secondary Structure
MKSYIEPFIASKALSQNSQKAYRYDLQQFCQLVGERVNQDKLLLYQNSIANLSLSAKKRK
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHH
LSTANQFLYYLYQIKYLNSYFRLTDTMKVMRTEKQQAAIINTDIFYQKTPFVWGQLISLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHEEECCCHHHHHHHHHH
ILELGLTPSEVAGIEVANLDLSFQMLTLKTKKGVRVLPLSQILIPFLEQQLIGKEVYLFE
HHHHCCCHHHHCCEEEEECCCEEEEEEEECCCCCEEECHHHHHHHHHHHHHCCCEEEEEE
HRGIPFSRQWFFNHLKTFVRSIGYEGLTAQKLREQFILKEKLAGKSIIELSDILGLKSPV
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
TLEKYYKS
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]