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The map label for this gene is yncI [H]

Identifier: 21909758

GI number: 21909758

Start: 263078

End: 263815

Strand: Direct

Name: yncI [H]

Synonym: SpyM3_0222

Alternate gene names: 21909758

Gene position: 263078-263815 (Clockwise)

Preceding gene: 21909757

Following gene: 21909759

Centisome position: 13.84

GC content: 37.94

Gene sequence:

>738_bases
ATGGGAGGTCATCATCTTAGTTTGGGACAGGTAGCGGTTGAGGAGAAAAGTAATGAAATTGTTGCCATTCCTCAGTTATT
GCGGACAATTGATATCCGTAAAAGCATTGTAACGATAGACGCAATGGGCACGCAGACGGCTATCGTTGATACGATTATAA
AAGGTAAAGCAGACTATTGCTTAGCCGTCAAAGGAAATCAAAAAACACTTTATGATGCTATTGCTCTTTATTTTAGTGAT
GTCAACTTATTGGAAGAACTCCAAGAAAATGCACAGTATTATCAGACTGTTGAAAAATCTAGGGGACAGATTGAAGTTAG
AGAATACTGGGTGTCTTCCGATATCAAATGGTTGTGTCAAAACCATCCCAAATGGCATAAGTTACGTGGTATTGGGATGA
CTCGTAACATGATTGATAAGGATGGTCAGCTGAGTCAAGAGAATCGTTATTTTATCTTTAGCTTTAAGCCGGATGTCCTC
ACATTTGCCAATTGTGTACGAGGTCATTGGCAGATAGAGAGTATGCACTGGTTATTGGACGTTGTTTATCATGAAGATCA
TCATCAGACATTGGATAAAAGAGCCGCATTTAACCTAAATCTTATCCGAAAAATGTGCTTATATTTTCTCAAAGTGATGG
TATTTCCTAAAAAAGACCTCAGTTATCGTCGCAAACAACGGTATATTTCTGTCCATTTGGAAGATTATTTAGTCCAATTA
TTTGGAGAAAGAGGCTAA

Upstream 100 bases:

>100_bases
AGCTTAGATGCCGTTCATCAACTGATTTCAGTGGAGGGTAAAACGATTCGAGACAATCGAGGTAAAAATCAGAAGCCTGT
TCATATTGTAACGGCTTATG

Downstream 100 bases:

>100_bases
GCAGATGATTGATTTAAAAAGGAATCTTTTCAAAATTGATGTCCGGGCACAAAAGGATGATGAGAAAGTTTTCATGCGTA
CGGCGTGATTTAACTATGGT

Product: IS1548 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQKTLYDAIALYFSD
VNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWLCQNHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSFKPDVL
TFANCVRGHWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQL
FGERG

Sequences:

>Translated_245_residues
MGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQKTLYDAIALYFSD
VNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWLCQNHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSFKPDVL
TFANCVRGHWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQL
FGERG
>Mature_244_residues
GGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQKTLYDAIALYFSDV
NLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWLCQNHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSFKPDVLT
FANCVRGHWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQLF
GERG

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1787733, Length=248, Percent_Identity=35.4838709677419, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789896, Length=249, Percent_Identity=34.5381526104418, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786924, Length=110, Percent_Identity=43.6363636363636, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 28715; Mature: 28583

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYC
CCCCCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCEE
LAVKGNQKTLYDAIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWLCQ
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCCHHHHHC
NHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSFKPDVLTFANCVRGHWQIESMHWLLD
CCCCHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCEEEHHHHHHHH
VVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQL
HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEHHHHHHHHH
FGERG
HCCCC
>Mature Secondary Structure 
GGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYC
CCCCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCEE
LAVKGNQKTLYDAIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWLCQ
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCCHHHHHC
NHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSFKPDVLTFANCVRGHWQIESMHWLLD
CCCCHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCEEEHHHHHHHH
VVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQL
HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEHHHHHHHHH
FGERG
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]