Click here to switch to the map view.

The map label for this gene is cbf [H]

Identifier: 21909731

GI number: 21909731

Start: 222711

End: 223649

Strand: Direct

Name: cbf [H]

Synonym: SpyM3_0195

Alternate gene names: 21909731

Gene position: 222711-223649 (Clockwise)

Preceding gene: 21909730

Following gene: 21909732

Centisome position: 11.72

GC content: 39.83

Gene sequence:

>939_bases
ATGAAAATTAATCAAATGAAAAAAGACCAGCTTTTTGAAGGGTTCTACCTCATTAAGTCGGCAGAGGTTCGTAAGACAAG
GGCTGGTAAAGATTTTATTAGCCTTACCTTTCAGGATGACACTGGCGAGATTTCAGGAAATCTGTGGGATGCCCAACCTT
ATAATGTGGAAGAATTTACTGCTGGTAAAGTCGTGTTTATGAAAGGGCGACGCGAGGTCTATAATGGTACCCCTCAGGTT
AATCAAATCACCTTGCGAAATGTTCGCCCAGGGGAGCCCAATGATCCAAAGGACTTCAAAGAAAAGGCACCTGTCAGTGT
TGAAGAAGTACGTGACTATTTGGAACAGATGCTCTTTAAAATTGAAAATGCAACGTGGCAACGAATTGTAAGGGCTCTTT
ATCGTAAGTATGATAAAGAATTTTATACTTATCCTGCAGCTAAAACAAACCACCATGCTTTTGAGTCAGGTCTCGCCTAC
CATACTGCTACGATGGTCAGACTAGCAGATAGCATTGGAGATATCTATCCTGACTTAAATAAGAGTCTACTGTTTGCAGG
TATTATGTTACATGACTTAGCTAAAGTCATAGAATTAACAGGACCAGATAATACAGAATACACCGTTCGTGGTAACTTGA
TTGGGCATATTTCCCTCATTAACGAAGAAATTACAAAAGTAATTTCAGAACTACAAATCGATGATACCAAAGAAGAAGTC
ATTGTCCTTAGGCACGTGATTTTAAGCCATCACGGGCAATTAGAATACGGTAGTCCGGTACGTCCACGCATCATGGAAGC
TGAAATTATTCATATGATTGACAATATTGATGCTAATATGATGATGATGACAACAGCTCTTAGCCGTGTTAGCGAAGGCG
AGATGACCAATCGGATTTTTGCCATGGATAATCGGTCTTTTTACAAGCCAAACTATTGA

Upstream 100 bases:

>100_bases
AGGACAAATGCCATTGTTCGAGCCTTGAATACCGTTGAAACTTATCAAGACCAAGCAACAAAATCTCTCTTGAACATGCC
CTTATTAGAAGAGGAAAATA

Downstream 100 bases:

>100_bases
TCAGTGTTTCTCAAGTAATAGTTCCTTTGCTTTTGTGATGATTTTTGATGTGCTTAACACTTATGATGGTTTCATAAGTG
TTTTTGGCTCTTGTTATGGT

Product: CMP-binding factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MKINQMKKDQLFEGFYLIKSAEVRKTRAGKDFISLTFQDDTGEISGNLWDAQPYNVEEFTAGKVVFMKGRREVYNGTPQV
NQITLRNVRPGEPNDPKDFKEKAPVSVEEVRDYLEQMLFKIENATWQRIVRALYRKYDKEFYTYPAAKTNHHAFESGLAY
HTATMVRLADSIGDIYPDLNKSLLFAGIMLHDLAKVIELTGPDNTEYTVRGNLIGHISLINEEITKVISELQIDDTKEEV
IVLRHVILSHHGQLEYGSPVRPRIMEAEIIHMIDNIDANMMMMTTALSRVSEGEMTNRIFAMDNRSFYKPNY

Sequences:

>Translated_312_residues
MKINQMKKDQLFEGFYLIKSAEVRKTRAGKDFISLTFQDDTGEISGNLWDAQPYNVEEFTAGKVVFMKGRREVYNGTPQV
NQITLRNVRPGEPNDPKDFKEKAPVSVEEVRDYLEQMLFKIENATWQRIVRALYRKYDKEFYTYPAAKTNHHAFESGLAY
HTATMVRLADSIGDIYPDLNKSLLFAGIMLHDLAKVIELTGPDNTEYTVRGNLIGHISLINEEITKVISELQIDDTKEEV
IVLRHVILSHHGQLEYGSPVRPRIMEAEIIHMIDNIDANMMMMTTALSRVSEGEMTNRIFAMDNRSFYKPNY
>Mature_312_residues
MKINQMKKDQLFEGFYLIKSAEVRKTRAGKDFISLTFQDDTGEISGNLWDAQPYNVEEFTAGKVVFMKGRREVYNGTPQV
NQITLRNVRPGEPNDPKDFKEKAPVSVEEVRDYLEQMLFKIENATWQRIVRALYRKYDKEFYTYPAAKTNHHAFESGLAY
HTATMVRLADSIGDIYPDLNKSLLFAGIMLHDLAKVIELTGPDNTEYTVRGNLIGHISLINEEITKVISELQIDDTKEEV
IVLRHVILSHHGQLEYGSPVRPRIMEAEIIHMIDNIDANMMMMTTALSRVSEGEMTNRIFAMDNRSFYKPNY

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 35954; Mature: 35954

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINQMKKDQLFEGFYLIKSAEVRKTRAGKDFISLTFQDDTGEISGNLWDAQPYNVEEFT
CCCCHHHHHHHHHCCCEEECCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHC
AGKVVFMKGRREVYNGTPQVNQITLRNVRPGEPNDPKDFKEKAPVSVEEVRDYLEQMLFK
CCCEEEEECCHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHH
IENATWQRIVRALYRKYDKEFYTYPAAKTNHHAFESGLAYHTATMVRLADSIGDIYPDLN
HCCHHHHHHHHHHHHHHCHHHEECCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCC
KSLLFAGIMLHDLAKVIELTGPDNTEYTVRGNLIGHISLINEEITKVISELQIDDTKEEV
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEHHHHHHHHHHHHHHHCCCCCHHHH
IVLRHVILSHHGQLEYGSPVRPRIMEAEIIHMIDNIDANMMMMTTALSRVSEGEMTNRIF
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHCEEE
AMDNRSFYKPNY
EECCCCCCCCCC
>Mature Secondary Structure
MKINQMKKDQLFEGFYLIKSAEVRKTRAGKDFISLTFQDDTGEISGNLWDAQPYNVEEFT
CCCCHHHHHHHHHCCCEEECCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHC
AGKVVFMKGRREVYNGTPQVNQITLRNVRPGEPNDPKDFKEKAPVSVEEVRDYLEQMLFK
CCCEEEEECCHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHH
IENATWQRIVRALYRKYDKEFYTYPAAKTNHHAFESGLAYHTATMVRLADSIGDIYPDLN
HCCHHHHHHHHHHHHHHCHHHEECCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCC
KSLLFAGIMLHDLAKVIELTGPDNTEYTVRGNLIGHISLINEEITKVISELQIDDTKEEV
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEHHHHHHHHHHHHHHHCCCCCHHHH
IVLRHVILSHHGQLEYGSPVRPRIMEAEIIHMIDNIDANMMMMTTALSRVSEGEMTNRIF
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHCEEE
AMDNRSFYKPNY
EECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA