Click here to switch to the map view.

The map label for this gene is comYA [H]

Identifier: 21909614

GI number: 21909614

Start: 102242

End: 103180

Strand: Direct

Name: comYA [H]

Synonym: SpyM3_0078

Alternate gene names: 21909614

Gene position: 102242-103180 (Clockwise)

Preceding gene: 21909613

Following gene: 21909615

Centisome position: 5.38

GC content: 37.59

Gene sequence:

>939_bases
ATGGTACAAGCATTAGCAAAAGCTATTCTAGCAAAAGCTGAACAGGTTCAGGCACAAGATATTTATATTTTGCCAAGAGC
AGATCAATATGATCTTTTTTTACGAATAGGAGATGAAAGGAGATTAGTTGATGTTTATCAGAGCGATCGGATGGCTCCTC
TTATTAGTCACTTTAAATTCGTTGCAGGAATGATAGTTGGTGAAAAGAGACGTTGTCAGGTGGGTTCATGTGATTATAAG
CTTAGTAAAGATAAGCAGTTATCTTTGCGCTTATCTAGCGTGGGTGATTATCGCGGGCAAGAAAGCTTAGTGATTCGTCT
GCTTCATCATCAAAATAAAAGTGTACATTATTGGTTTGATGGATTGACAAAAGTAGCCAATCAGGTTGGCGGTAGAGGGT
TGTATTTATTTGCAGGACCAGTTGGGTCTGGGAAGACAACCTTGATGTACCAGCTGATTTCGAGTTATCATCAAGAAGCA
CAGGTTATTAGTATAGAAGATCCTGTAGAAATTAAAAATCACCAGATTTTACAATTACAAGTGAATGATGATATTGGTAT
GACTTATGACAATTTGATCAAACTGTCTTTACGCCATCGACCAGATATTTTAGTTATTGGTGAGATTCGAGATAGTCAAA
CAGCAAGAGCCGTTATTAGGGATAGTCTAACAGGTGCCATGGTTTTTTCAACGGTTCACGCTAAAAGTATCTCGGGTGTT
TATGCAAGATTGTTAGAACTTGGTGTAACGAAAGCAGAACTGTCTAATTGCTTAGCATTAATTGCTTACCAAAGGTTACT
TAATGGAGGAGCATTGATTGACTCTACTCAAAACGAATTTGAATATTATTCCTCATCGAACTGGAATCAACAAATTGATC
AGCTTCTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAG

Upstream 100 bases:

>100_bases
ACCTTTAAGTGTTTGTTAAAAACAAAATAAGTTAAAAGAAAATATCACTTCTTATGATATTTTCTTTTTTTGTTTACGAA
TAAATGAGTAAGGAGGAATT

Downstream 100 bases:

>100_bases
TAAACATCAGCATAAATTCATTCAATTACTAGCTAATCTTTTATCTACAGGATTTAGCTTCGCAGAGGTTATTGCTTTTT
TAAAAAGAAGCCAGTTGCTT

Product: putative ABC transporter subunit ComYA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MVQALAKAILAKAEQVQAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKFVAGMIVGEKRRCQVGSCDYK
LSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFDGLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISSYHQEA
QVISIEDPVEIKNHQILQLQVNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRDSLTGAMVFSTVHAKSISGV
YARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGHLNPKQAKLEKII

Sequences:

>Translated_312_residues
MVQALAKAILAKAEQVQAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKFVAGMIVGEKRRCQVGSCDYK
LSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFDGLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISSYHQEA
QVISIEDPVEIKNHQILQLQVNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRDSLTGAMVFSTVHAKSISGV
YARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGHLNPKQAKLEKII
>Mature_312_residues
MVQALAKAILAKAEQVQAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKFVAGMIVGEKRRCQVGSCDYK
LSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFDGLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISSYHQEA
QVISIEDPVEIKNHQILQLQVNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRDSLTGAMVFSTVHAKSISGV
YARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGHLNPKQAKLEKII

Specific function: Required for uptake of DNA by competent cells [H]

COG id: COG2804

COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1789723, Length=270, Percent_Identity=33.3333333333333, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1786296, Length=266, Percent_Identity=33.0827067669173, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87082188, Length=179, Percent_Identity=29.608938547486, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 35077; Mature: 35077

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQALAKAILAKAEQVQAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKF
CHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHCCCCHHHHHHHHH
VAGMIVGEKRRCQVGSCDYKLSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFD
HHHHHHCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEHH
GLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISSYHQEAQVISIEDPVEIKNHQILQLQ
HHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEE
VNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRDSLTGAMVFSTVHAKSISGV
ECCCCCCCHHHHEEEEECCCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
YARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGH
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHCCCCHHHHHHHHHHHCC
LNPKQAKLEKII
CCHHHHHHHHCC
>Mature Secondary Structure
MVQALAKAILAKAEQVQAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKF
CHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHCCCCHHHHHHHHH
VAGMIVGEKRRCQVGSCDYKLSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFD
HHHHHHCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEHH
GLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISSYHQEAQVISIEDPVEIKNHQILQLQ
HHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEE
VNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRDSLTGAMVFSTVHAKSISGV
ECCCCCCCHHHHEEEEECCCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
YARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGH
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHCCCCHHHHHHHHHHHCC
LNPKQAKLEKII
CCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2507524; 8969508; 9384377; 9422590; 9723928 [H]