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The map label for this gene is lptF [H]

Identifier: 218930456

GI number: 218930456

Start: 3844739

End: 3845833

Strand: Reverse

Name: lptF [H]

Synonym: YPO3440

Alternate gene names: 218930456

Gene position: 3845833-3844739 (Counterclockwise)

Preceding gene: 218930461

Following gene: 218930455

Centisome position: 82.64

GC content: 48.86

Gene sequence:

>1095_bases
GTGATCATCATTAGATATCTGGTACGGGAAACCTTAAAAAGCCAAATTGCGATCCTGTTCATCCTGCTATTAATCTTCTT
TAGCCAGAAGTTAGTTCGGATATTAGGTGCCGCTGTTGATGGTGAAATCCCGACAAATGTAGTTTTATCCCTTTTGGGAC
TTGGTGTGCCGGAAATGGCACAACTCATCTTACCATTGAGCTTATTCCTAGGGCTGCTGATGACCTTGGGCAAACTGTAC
ACGGAGAGTGAAATCACCGTGATGAATGCCTGTGGCATGGGTAAAAAGTCCTTGATCATGGCAGCGTTAATTCTGGCGCT
CTTCACCTCCGGGCTGGCAGCCATCAACACTATCTGGCTTGGTCCTTGGTCTTCTAAACATCAAGATGTCGTACTGAACG
ATGCCAAAGCCAATCCGAGTCTGGCAGCGCTTGGCGGTGGGCAGTTTAAATCTTCAAACGATGGTAATTCAGCTCTTTTT
ATTGGCAATGTGGCGGGTAAAGAGTTTAACCGTGTGTTTTTGGCACAATTGCGCCCGAACGGTAACCAGCGCCCCTCTGT
GGTGGTGGCCGATAGCGGCCATATGAGTGAGCTCCCGGACGGTTCACAAATGGTTATTCTGAACAAAGGGACTCGCTATG
AAGGCACCGCCTTGCTACGCGATTTCCGTATTACTGACTTCGTTGATTACCAGGCTGTTATAGGACACAAACAAGTACAG
CAAAGCAGCAACGGGGCCGATCAGATGTCAATGAAAGAGCTATGGCGCTCTCAAGAACCTGATGCACGGGCTGAGTTCCA
CTGGCGTCTAACACTGATTGTTTCGGTCGTTATTATGGCATTGCTAGTGGTGCCGTTGAGTGTGGTTAACCCACGCCAGG
GTCGTGTCCTGAGTATGCTTCCGGCTATGTTGCTGTATTTGATTTTCTTCCTGTTACAAAGCTCCCTGCGTTCTAAGGCG
GGTAATGGCCAACTGGATCCACTGGTCTGGATGTGGGCTGTTAATGGTGCTTATTTGGCTCTCGCGATAATCTTGAACCT
GTGGGATGGCCTGATGGCTCGTAAATTACGTGCTCGATTGAGAGGTGCTGCCTGA

Upstream 100 bases:

>100_bases
TTTAGCTGTGAAGGTTGCCATATGATGAGAATAAATGGCGGATTAACGATGAAACTATCGATTTTCCTGCAAAAAGACAA
GTTTTCACAGGCGTATTAGC

Downstream 100 bases:

>100_bases
TGTTTGGTGTATTAGACCGCTATATCGGACGGACTATCCTCAATACTATCCTGATGACGTTATTAATGTTGGTGTCGCTG
TCGGGCATCATCAAGTTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MIIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNVVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLY
TESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWLGPWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALF
IGNVAGKEFNRVFLAQLRPNGNQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGTALLRDFRITDFVDYQAVIGHKQVQ
QSSNGADQMSMKELWRSQEPDARAEFHWRLTLIVSVVIMALLVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQSSLRSKA
GNGQLDPLVWMWAVNGAYLALAIILNLWDGLMARKLRARLRGAA

Sequences:

>Translated_364_residues
MIIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNVVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLY
TESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWLGPWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALF
IGNVAGKEFNRVFLAQLRPNGNQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGTALLRDFRITDFVDYQAVIGHKQVQ
QSSNGADQMSMKELWRSQEPDARAEFHWRLTLIVSVVIMALLVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQSSLRSKA
GNGQLDPLVWMWAVNGAYLALAIILNLWDGLMARKLRARLRGAA
>Mature_364_residues
MIIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNVVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLY
TESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWLGPWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALF
IGNVAGKEFNRVFLAQLRPNGNQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGTALLRDFRITDFVDYQAVIGHKQVQ
QSSNGADQMSMKELWRSQEPDARAEFHWRLTLIVSVVIMALLVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQSSLRSKA
GNGQLDPLVWMWAVNGAYLALAIILNLWDGLMARKLRARLRGAA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=358, Percent_Identity=71.7877094972067, Blast_Score=471, Evalue=1e-134,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 39856; Mature: 39856

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNVVLSLLGLGVPEMA
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
QLILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWL
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHEEE
GPWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIGNVAGKEFNRVFLAQLRPN
CCCCCCCCCEEEECCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCHHHHEEEEEECCC
GNQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGTALLRDFRITDFVDYQAVIGHKQVQ
CCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QSSNGADQMSMKELWRSQEPDARAEFHWRLTLIVSVVIMALLVVPLSVVNPRQGRVLSML
HCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
PAMLLYLIFFLLQSSLRSKAGNGQLDPLVWMWAVNGAYLALAIILNLWDGLMARKLRARL
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHCHHHHHHHHHHHHHHHHHHHHHHHHH
RGAA
CCCC
>Mature Secondary Structure
MIIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNVVLSLLGLGVPEMA
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
QLILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWL
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHEEE
GPWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIGNVAGKEFNRVFLAQLRPN
CCCCCCCCCEEEECCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCHHHHEEEEEECCC
GNQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGTALLRDFRITDFVDYQAVIGHKQVQ
CCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QSSNGADQMSMKELWRSQEPDARAEFHWRLTLIVSVVIMALLVVPLSVVNPRQGRVLSML
HCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
PAMLLYLIFFLLQSSLRSKAGNGQLDPLVWMWAVNGAYLALAIILNLWDGLMARKLRARL
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHCHHHHHHHHHHHHHHHHHHHHHHHHH
RGAA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]