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The map label for this gene is intB [H]

Identifier: 218930454

GI number: 218930454

Start: 3842016

End: 3843275

Strand: Reverse

Name: intB [H]

Synonym: YPO3438

Alternate gene names: 218930454

Gene position: 3843275-3842016 (Counterclockwise)

Preceding gene: 218930455

Following gene: 218930453

Centisome position: 82.58

GC content: 49.29

Gene sequence:

>1260_bases
ATGGCTCTGAGTGATGTGAAGGTTCGTACAGCCAAGCCTGAAGCAAAAGCCTATAAACTTACCGACGGCGAAGGCATGGT
GTTACTGGTTCACCCTAACGGCTCGAAATACTGGCGGCTACGCTATCGCTTTGACGGTAAAGAAAAGATGTTGGCGTTGG
GGAAGTACCCTGAAATATCACTGGCTGATGCCAGGGCACGGCGTGACGAAGCTCGTAAGCAGTTAGCTAATGGTGTGGAC
CCAAGTGAGAGCAAGAAAGCCGTTAAGGTAGAGCAGGAGCAAGAAGCGATAACTTTTGAAGTGGTAGCCAGAGAGTGGCA
TGCCAGTAATCGTCAATGGTCAGAAGCTCACAGTGCTCGAGTACTCAAAAGCTTAGAGGACAATCTCTTTCAAGCCATTG
GCAAACGGAATATCGCAGACCTCGGAACCCGTGATCTTTTACCTCCAATTAAAGCCGTAGAGATGGCTGGACGTCTTCAG
GTGGCTTCCCGCCTGCAACAACGAACCACAGCAATAATGCGCTATGCAGTTCAAAGCGGTTTAATTGATTACAACCCCGC
GCAGGAGATGGCGGGCGCTGTTGCTACCGGTAAAAGAAAGCACCGCGCTGCACTCGAGTTAAACCGTGTTTCAGAGTTAC
TTCATCGCATCGACTACTACAGTGGCAGGCCACTCACTCGACTAGCGGTAGAATTGACTTTATTGGTCTTTATCCGTTCC
AGTGAATTACGCTTCGCCCGTTGGTCAGAAGTCGATTTTGAAACTGCAATGTGGACGATTCCGGGAGAACGTGAACCACT
GGAAGGTGTTAAGCATTCACATCGAGGTTCAAAAATGCGCACTCCCCATCTTATCCCCTTATCCCGTCAAGCTCTCGCCA
TTCTGGAAAAGATCAAAAGCATGAGTGGAAACCGTGAGCTGATCTTTATCGGTGATCACGACCCACGTAAACCGATGAGT
GAAAACACGGTAAACAAAGCCCTACGCGTGATGGGATATGACACGAAAGTTGAAGTCTGTGGCCACGGTTTCAGAACCAT
GGCTTGTAGTTCATTGATTGAGTCTGGATTGTGGTCGAGGGATGCAGTAGAACGGCAGATGAGTCATCAGGAGCGCAACT
CTGTGCGTGCGGCTTATATCCATAAAGCCGAGCACTTAGATGAGCGCAGATTGATGATTCAGTGGTGGGCTGATTACTTG
GATGCGAATCGGGAGAAGGGGGTTAGTCCGTTTGATTTTGCGAAGTTGAATACGAGCTGA

Upstream 100 bases:

>100_bases
GATTCAATCTACATCAACTTACTGATGTAGGTACATCTGCGGGTATATCCCGGTTCGATCATGTTTGTACCCACGCAGAA
CCCTTGAAAGGATACTCAAC

Downstream 100 bases:

>100_bases
TTAAAAAAAGTTTCTGTAAGGCATGTATCTGATATGCCTTATTTTTTCTAATTGTGTTATTTGCGGGCTTTTAACTCAAC
TGTGCCACTACAGATTTTGA

Product: integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEISLADARARRDEARKQLANGVD
PSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQ
VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKSMSGNRELIFIGDHDPRKPMS
ENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYL
DANREKGVSPFDFAKLNTS

Sequences:

>Translated_419_residues
MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEISLADARARRDEARKQLANGVD
PSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQ
VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKSMSGNRELIFIGDHDPRKPMS
ENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYL
DANREKGVSPFDFAKLNTS
>Mature_418_residues
ALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEISLADARARRDEARKQLANGVDP
SESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQV
ASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRSS
ELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKSMSGNRELIFIGDHDPRKPMSE
NTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLD
ANREKGVSPFDFAKLNTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=404, Percent_Identity=35.1485148514851, Blast_Score=242, Evalue=3e-65,
Organism=Escherichia coli, GI1788690, Length=405, Percent_Identity=33.5802469135802, Blast_Score=234, Evalue=1e-62,
Organism=Escherichia coli, GI145693166, Length=404, Percent_Identity=34.6534653465347, Blast_Score=226, Evalue=2e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47743; Mature: 47612

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS
CCCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEEEECCHHHHEEECCCCCCC
LADARARRDEARKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG
HHHHHHHHHHHHHCCCCHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS
CCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR
CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHCCCCH
DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS
CCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEEEECCHHHHEEECCCCCCC
LADARARRDEARKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG
HHHHHHHHHHHHHCCCCHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS
CCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR
CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHCCCCH
DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]