Click here to switch to the map view.

The map label for this gene is sodC [H]

Identifier: 218930392

GI number: 218930392

Start: 3763462

End: 3764067

Strand: Reverse

Name: sodC [H]

Synonym: YPO3375

Alternate gene names: 218930392

Gene position: 3764067-3763462 (Counterclockwise)

Preceding gene: 218930393

Following gene: 218930391

Centisome position: 80.88

GC content: 50.5

Gene sequence:

>606_bases
ATGAAATTAAGTACATTATTGCTACCTGTTATTCTTTACTCCAGCGCAACACTGGCCGCTAACATGGCTGGCATGAATGA
TAAGGCCAGCATGAATGATAAGGCCAGCATGAATGATATGGCCAGCATGAATGGTAAGGCTAGCATGACTGTGAAAATCA
ACGAATCATTGCCACAAGGTAATGGGAAAGCGCTTGGCACCGTGACGGTGACTGAAACCGCTTATGGCTTACTGTTTACG
CCACATCTCACTGGGCTGGCTCCGGGAATTCACGGTTTCCATCTGCATGAAAAACCCAGTTGTGCTCCGGGGATGAAAGA
TGGCAAGGCAGTGCCAGCATTGGCAGCCGGGGGGCATCTTGACCCAAATAAGACCGGGGTACACCTTGGTCCTTACAACG
ATAAAGGGCATCTGGGGGATCTGCCGGGATTGGTGGTTAATGCAGATGGCACCGCCACCTATCCCGTATTGGCTCCGCGC
CTGAAATCGTTGTCAGAGGTGAAACAGCATGCGTTAATGATCCATGCTGGCGGTGATAATTACTCTGATCATCCAATGCC
TTTAGGCGGTGGTGGCGCACGGATGGCATGTGGAGTCATTGAGTAA

Upstream 100 bases:

>100_bases
TGTGTGCGGGAGTATGAAGCATAAGTAATAATTAATCGTCAAAAGTTTCCTATTGACAAGGTTAAACCAGACTTAATCAA
CATATAAGGGATATAACAAT

Downstream 100 bases:

>100_bases
CCGTCTGATACAGTTAAACTGGCTACCCGAGCGTAGCCAGTTTGGTGGAGGCCGGGTAATCTGCGATAATCGGTCACTGA
TTTGAATAACGATAGAGATA

Product: superoxide dismutase [Cu-Zn] precursor

Products: NA

Alternate protein names: sodCI [H]

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MKLSTLLLPVILYSSATLAANMAGMNDKASMNDKASMNDMASMNGKASMTVKINESLPQGNGKALGTVTVTETAYGLLFT
PHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPR
LKSLSEVKQHALMIHAGGDNYSDHPMPLGGGGARMACGVIE

Sequences:

>Translated_201_residues
MKLSTLLLPVILYSSATLAANMAGMNDKASMNDKASMNDMASMNGKASMTVKINESLPQGNGKALGTVTVTETAYGLLFT
PHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPR
LKSLSEVKQHALMIHAGGDNYSDHPMPLGGGGARMACGVIE
>Mature_201_residues
MKLSTLLLPVILYSSATLAANMAGMNDKASMNDKASMNDMASMNGKASMTVKINESLPQGNGKALGTVTVTETAYGLLFT
PHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPR
LKSLSEVKQHALMIHAGGDNYSDHPMPLGGGGARMACGVIE

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=155, Percent_Identity=61.9354838709677, Blast_Score=188, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 20675; Mature: 20675

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSTLLLPVILYSSATLAANMAGMNDKASMNDKASMNDMASMNGKASMTVKINESLPQG
CCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCC
NGKALGTVTVTETAYGLLFTPHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHL
CCCEEEEEEECCCCCEEEECCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCC
DPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSEVKQHALMIHAGGDN
CCCCCEEEECCCCCCCCCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHEEEEEEECCCC
YSDHPMPLGGGGARMACGVIE
CCCCCCCCCCCCCEEEEECCC
>Mature Secondary Structure
MKLSTLLLPVILYSSATLAANMAGMNDKASMNDKASMNDMASMNGKASMTVKINESLPQG
CCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCC
NGKALGTVTVTETAYGLLFTPHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHL
CCCEEEEEEECCCCCEEEECCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCC
DPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSEVKQHALMIHAGGDN
CCCCCEEEECCCCCCCCCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHEEEEEEECCCC
YSDHPMPLGGGGARMACGVIE
CCCCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9379906; 9391141; 11677609; 8869506; 10970746 [H]