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The map label for this gene is nlpD [H]

Identifier: 218930374

GI number: 218930374

Start: 3745278

End: 3746279

Strand: Reverse

Name: nlpD [H]

Synonym: YPO3356

Alternate gene names: 218930374

Gene position: 3746279-3745278 (Counterclockwise)

Preceding gene: 218930375

Following gene: 218930373

Centisome position: 80.5

GC content: 47.8

Gene sequence:

>1002_bases
ATGAGCACAGGAAGCCCAATGATTAGATTACGCCGAGTCGCGGCATGTACGGTTGTGAGTTTGTGGTTAGTAGGTTGTAC
CAATGATAATTCAACATCTGCACCCATCAGCAGTGTGGGGGGCGATCGTTCAGGTACGATGTTGAGTAAAGCGAACACCG
ATAGCTCTGGGGGGCGCATAGTTTATAACCGCAGTTACGACAATATCCCCAAAGGAAGCTACAGCGGTAATACCTATACC
GTTAAGCGTGGTGATACGCTGTTTTATATCGCTTGGATAACAGGAAATGACTTCCGTGATTTGGCAGCAAAAAATAATAT
TGCAGAACCCTATAGCCTGAATGTGGGGCAATCTATTCAATTGGGTAATGGGTCTGGTGGCGGTATGTTAGCCGCCACTG
ATGCCACATCAAGTGGAATAGCACAACCGCCGTCAAATATTCAGAACACAACTACTATTCAGAACACAACTACAACGGTT
GATTCTCAATCAACTAGCGCGTATTCTGGAAACTCGGGTAAACAGAATGTTGGCAAAATGTTGCCATCATCTGGTGCGGT
TGTCGCTACAACAGCACCTGTTACCGCACCAAGCAGTTCTGTCAGTGAACCAGCCAGCAATGGTGGTCCAGTTAGTGGCT
GGAGATGGCCAACCGATGGTAAAACGATCGATAGCTTCTCTGCTTCCGAAGGGGGCAATAAAGGGATTGATATCGCCGGT
TCTCGTGGGCAACCTATTCTCGCCACAGCAAGTGGCCGGGTTGTGTATGCTGGGAACGCACTGCGTGGTTACGGTAATCT
AATCATCATCAAACACAATGATGATTACCTGAGCGCCTACGCTCATAACGATACAATGCTGGTCCGGGAACAACAAGAAG
TGAAGGCGGGTCAAAAAATAGCAACCATGGGTAGCACCGGAACCAGTTCAGTTAGATTGCATTTTGAAATTCGTTACAAG
GGGAAATCCGTAAACCCGCTGCGTTACCTTCCGCAGCGATAG

Upstream 100 bases:

>100_bases
AGTCTTTTCTCTTTGAGTCTCTTCTATTTCAGCCTTCACCTTTAACTACCGTGTAAAGGTATTTGGACATATCGTTTATT
ATTGCTGTCATGGGGGAAGC

Downstream 100 bases:

>100_bases
ATTGGGCAGAATACGCTGTATTCTGCTCGCCGGATTCACGGGTAGGAGCAGCATATGAGCCAAAGTACGCTGAAAGTTAA
CGAGTTGCATGAAGATGCTG

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSTGSPMIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSKANTDSSGGRIVYNRSYDNIPKGSYSGNTYT
VKRGDTLFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQLGNGSGGGMLAATDATSSGIAQPPSNIQNTTTIQNTTTTV
DSQSTSAYSGNSGKQNVGKMLPSSGAVVATTAPVTAPSSSVSEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAG
SRGQPILATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSVRLHFEIRYK
GKSVNPLRYLPQR

Sequences:

>Translated_333_residues
MSTGSPMIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSKANTDSSGGRIVYNRSYDNIPKGSYSGNTYT
VKRGDTLFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQLGNGSGGGMLAATDATSSGIAQPPSNIQNTTTIQNTTTTV
DSQSTSAYSGNSGKQNVGKMLPSSGAVVATTAPVTAPSSSVSEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAG
SRGQPILATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSVRLHFEIRYK
GKSVNPLRYLPQR
>Mature_332_residues
STGSPMIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSKANTDSSGGRIVYNRSYDNIPKGSYSGNTYTV
KRGDTLFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQLGNGSGGGMLAATDATSSGIAQPPSNIQNTTTIQNTTTTVD
SQSTSAYSGNSGKQNVGKMLPSSGAVVATTAPVTAPSSSVSEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAGS
RGQPILATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSVRLHFEIRYKG
KSVNPLRYLPQR

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=387, Percent_Identity=56.5891472868217, Blast_Score=395, Evalue=1e-111,
Organism=Escherichia coli, GI87082174, Length=262, Percent_Identity=46.9465648854962, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI87082297, Length=145, Percent_Identity=35.1724137931034, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081989, Length=96, Percent_Identity=36.4583333333333, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 34825; Mature: 34694

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGSPMIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSKANTDSSGGRI
CCCCCHHHHHHHHHHHHEEEEEEEEECCCCCCCCCHHHCCCCCCCCEEEECCCCCCCCEE
VYNRSYDNIPKGSYSGNTYTVKRGDTLFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQ
EEECCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHCCCCCCCEEECCCCEEE
LGNGSGGGMLAATDATSSGIAQPPSNIQNTTTIQNTTTTVDSQSTSAYSGNSGKQNVGKM
ECCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCHHHHHH
LPSSGAVVATTAPVTAPSSSVSEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAG
CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEC
SRGQPILATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKI
CCCCEEEEECCCCEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEE
ATMGSTGTSSVRLHFEIRYKGKSVNPLRYLPQR
EEECCCCCCEEEEEEEEEECCCCCCHHHCCCCC
>Mature Secondary Structure 
STGSPMIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSKANTDSSGGRI
CCCCHHHHHHHHHHHHEEEEEEEEECCCCCCCCCHHHCCCCCCCCEEEECCCCCCCCEE
VYNRSYDNIPKGSYSGNTYTVKRGDTLFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQ
EEECCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHCCCCCCCEEECCCCEEE
LGNGSGGGMLAATDATSSGIAQPPSNIQNTTTIQNTTTTVDSQSTSAYSGNSGKQNVGKM
ECCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCHHHHHH
LPSSGAVVATTAPVTAPSSSVSEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAG
CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEC
SRGQPILATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKI
CCCCEEEEECCCCEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEE
ATMGSTGTSSVRLHFEIRYKGKSVNPLRYLPQR
EEECCCCCCEEEEEEEEEECCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]