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The map label for this gene is wbyH

Identifier: 218930145

GI number: 218930145

Start: 3466984

End: 3468267

Strand: Reverse

Name: wbyH

Synonym: YPO3111

Alternate gene names: NA

Gene position: 3468267-3466984 (Counterclockwise)

Preceding gene: 218930146

Following gene: 218930144

Centisome position: 74.53

GC content: 35.28

Gene sequence:

>1284_bases
ATGGATATGAAATTTTGTAAAAACCGTTATATCAATACAGTCATTTTAGGGGCAGGCGTTGCGGGGTTAGGTGCAGCTCT
GAAAGCCCGTGAAGTAAATATTGAATATGAAATTTTTGAAGCAAAAGCATCTGCGGGTGGTTTGTTAGACAATTTTGTCA
TTGATGGATATCGTTTTGATAATGCAGTTCATCTTAGTTTTGCTACAGAAGAGAAAGTAAGAGATATTTTTGATAGAACA
CCTTATTTCTCTCATTCTCCAGATGCTGTAAATTTTGAAACAGATAAGTGGTTAAAACATCCAGTGCAGAATAACCTTTA
CCCTCTTCCTGCAATTGAGAAAGTCACACTCATTGAGTCCCTGATTCATCGTCCTGAGAGTGAGCTTGCTGATAACTACG
AATCTTGGTTAATTCACCAGTATGGTAATGAAATTGCCAAGCGATACCCTATGCGTTATACACGGAAATATTGGCAGTGT
AATGCGAATGAACTATCGGTTAGTTGGATTGGTAATCGTCTACGGCGAGCTAAGCTGTCAGAAATATTATATGGCGCATT
CACTGATGATACTCCTAATGATTATTATGCAAAAGAAATGCGTTATCCCAAAAAAGGAGGGTTTAAATCTTTTATTCAAC
CTCTTATAGATGAGAGCATTATTAACTATAATTATGAGGTTACTGAGATTGACTTATCTGGGAAGACTATCAAATTCTCT
AATGGAGTCATAATCAGTTATGAAAATTTAATAAATACATTACCACTACCACTGTTTATTGAGTTTTGTGGAGCTAATGT
ACCTACAAGTGTCAAAAAATCCGCAAGTAAGTTAGAGGCAACATCATTAGATCTAATATCTGTTGGCTTCAACAAGTCTA
TCATTAAAGATTTATGGTTTTATATCTATGATGAAGATATTTATGCAAGTCGCGCATATTCTCCCTCTGTTAAATCATCG
GATAATGTTCCTGACGGTTGCAGTTCGTTACAGTTTGAAATTTATAATCCCGGGAGAGATAGCCAGTATACTGTACAGGA
ATTGAAAGACAATGTTATGTATGCAATGAAAAAAATGGGAGTTGCAAATGATGAAGATATTGTTTTCTTGCATCACAAGC
GTCTCCCATGGGGTAATGTAGTATTCAAAAAAGATATGGAAAAGTATAGGGATATTGTTCGAGAATACATTTTTGACAAT
CAAGTGAAAAGTGTAGGACGTTTTGGTGAATGGGATTATTTATGGAGTAACCAGAGTTTTCTTAGTGGATATAGTTCAAT
TTAA

Upstream 100 bases:

>100_bases
TAGCTGTGCATCATTGGCGAGAATACAGGAACTCGGTTGGTTGTGCCAATATTCATTAAATAGTGCAATTAAAGATACAC
TAAACAGAATGCGGGTCTGA

Downstream 100 bases:

>100_bases
TAATTAAAATCTAACAGTTAATATACCATAAGTAACTTTCTTTAAAGTTGAAAATAAATAATTGCAGGCTAAAATGAAAA
TAAGTTCTCAAATGGTATGG

Product: hypothetical protein

Products: NA

Alternate protein names: UDP-Galactopyranose Mutase; Amine Oxidase Flavin-Containing; FAD Dependent Oxidoreductase; Amine Oxidase Family Protein; Teichuronic Acid Biosynthesis Glycosyltransferase TuaH; Flavin-Containing Amine Oxidoreductase Family Protein; Amine Oxidase Flavin-Containing Superfamily; Protoporphyrinogen Oxidase-Like Protein; Protoporphyrinogen Oxidase

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MDMKFCKNRYINTVILGAGVAGLGAALKAREVNIEYEIFEAKASAGGLLDNFVIDGYRFDNAVHLSFATEEKVRDIFDRT
PYFSHSPDAVNFETDKWLKHPVQNNLYPLPAIEKVTLIESLIHRPESELADNYESWLIHQYGNEIAKRYPMRYTRKYWQC
NANELSVSWIGNRLRRAKLSEILYGAFTDDTPNDYYAKEMRYPKKGGFKSFIQPLIDESIINYNYEVTEIDLSGKTIKFS
NGVIISYENLINTLPLPLFIEFCGANVPTSVKKSASKLEATSLDLISVGFNKSIIKDLWFYIYDEDIYASRAYSPSVKSS
DNVPDGCSSLQFEIYNPGRDSQYTVQELKDNVMYAMKKMGVANDEDIVFLHHKRLPWGNVVFKKDMEKYRDIVREYIFDN
QVKSVGRFGEWDYLWSNQSFLSGYSSI

Sequences:

>Translated_427_residues
MDMKFCKNRYINTVILGAGVAGLGAALKAREVNIEYEIFEAKASAGGLLDNFVIDGYRFDNAVHLSFATEEKVRDIFDRT
PYFSHSPDAVNFETDKWLKHPVQNNLYPLPAIEKVTLIESLIHRPESELADNYESWLIHQYGNEIAKRYPMRYTRKYWQC
NANELSVSWIGNRLRRAKLSEILYGAFTDDTPNDYYAKEMRYPKKGGFKSFIQPLIDESIINYNYEVTEIDLSGKTIKFS
NGVIISYENLINTLPLPLFIEFCGANVPTSVKKSASKLEATSLDLISVGFNKSIIKDLWFYIYDEDIYASRAYSPSVKSS
DNVPDGCSSLQFEIYNPGRDSQYTVQELKDNVMYAMKKMGVANDEDIVFLHHKRLPWGNVVFKKDMEKYRDIVREYIFDN
QVKSVGRFGEWDYLWSNQSFLSGYSSI
>Mature_427_residues
MDMKFCKNRYINTVILGAGVAGLGAALKAREVNIEYEIFEAKASAGGLLDNFVIDGYRFDNAVHLSFATEEKVRDIFDRT
PYFSHSPDAVNFETDKWLKHPVQNNLYPLPAIEKVTLIESLIHRPESELADNYESWLIHQYGNEIAKRYPMRYTRKYWQC
NANELSVSWIGNRLRRAKLSEILYGAFTDDTPNDYYAKEMRYPKKGGFKSFIQPLIDESIINYNYEVTEIDLSGKTIKFS
NGVIISYENLINTLPLPLFIEFCGANVPTSVKKSASKLEATSLDLISVGFNKSIIKDLWFYIYDEDIYASRAYSPSVKSS
DNVPDGCSSLQFEIYNPGRDSQYTVQELKDNVMYAMKKMGVANDEDIVFLHHKRLPWGNVVFKKDMEKYRDIVREYIFDN
QVKSVGRFGEWDYLWSNQSFLSGYSSI

Specific function: Unknown

COG id: COG1232

COG function: function code H; Protoporphyrinogen oxidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI71990307, Length=478, Percent_Identity=23.6401673640167, Blast_Score=81, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49242; Mature: 49242

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMKFCKNRYINTVILGAGVAGLGAALKAREVNIEYEIFEAKASAGGLLDNFVIDGYRFD
CCCHHHHHCCCCEEEEECCHHHHHHHHHHEEECEEEEEEEECCCCCCCHHHHEECCEEEC
NAVHLSFATEEKVRDIFDRTPYFSHSPDAVNFETDKWLKHPVQNNLYPLPAIEKVTLIES
CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHCCCCCCCCHHHHHHHHH
LIHRPESELADNYESWLIHQYGNEIAKRYPMRYTRKYWQCNANELSVSWIGNRLRRAKLS
HHHCCHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH
EILYGAFTDDTPNDYYAKEMRYPKKGGFKSFIQPLIDESIINYNYEVTEIDLSGKTIKFS
HHHHHCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEC
NGVIISYENLINTLPLPLFIEFCGANVPTSVKKSASKLEATSLDLISVGFNKSIIKDLWF
CCEEEEEHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH
YIYDEDIYASRAYSPSVKSSDNVPDGCSSLQFEIYNPGRDSQYTVQELKDNVMYAMKKMG
HEECCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
VANDEDIVFLHHKRLPWGNVVFKKDMEKYRDIVREYIFDNQVKSVGRFGEWDYLWSNQSF
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHH
LSGYSSI
HHHCCCC
>Mature Secondary Structure
MDMKFCKNRYINTVILGAGVAGLGAALKAREVNIEYEIFEAKASAGGLLDNFVIDGYRFD
CCCHHHHHCCCCEEEEECCHHHHHHHHHHEEECEEEEEEEECCCCCCCHHHHEECCEEEC
NAVHLSFATEEKVRDIFDRTPYFSHSPDAVNFETDKWLKHPVQNNLYPLPAIEKVTLIES
CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHCCCCCCCCHHHHHHHHH
LIHRPESELADNYESWLIHQYGNEIAKRYPMRYTRKYWQCNANELSVSWIGNRLRRAKLS
HHHCCHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH
EILYGAFTDDTPNDYYAKEMRYPKKGGFKSFIQPLIDESIINYNYEVTEIDLSGKTIKFS
HHHHHCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEC
NGVIISYENLINTLPLPLFIEFCGANVPTSVKKSASKLEATSLDLISVGFNKSIIKDLWF
CCEEEEEHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH
YIYDEDIYASRAYSPSVKSSDNVPDGCSSLQFEIYNPGRDSQYTVQELKDNVMYAMKKMG
HEECCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
VANDEDIVFLHHKRLPWGNVVFKKDMEKYRDIVREYIFDNQVKSVGRFGEWDYLWSNQSF
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHH
LSGYSSI
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA