Click here to switch to the map view.

The map label for this gene is araB

Identifier: 218929346

GI number: 218929346

Start: 2531746

End: 2533449

Strand: Reverse

Name: araB

Synonym: YPO2254

Alternate gene names: 218929346

Gene position: 2533449-2531746 (Counterclockwise)

Preceding gene: 218929354

Following gene: 218929345

Centisome position: 54.44

GC content: 53.17

Gene sequence:

>1704_bases
ATGACAGGCAACGTGATATCGGCAGACGGTGCTATAGCTCTCGGGTTGGATTTCGGTAGCGATTCCGTTCGTGTATTGGC
GGTAGATTGTCAACATGGCACTGAGATCGATACGGAAGTGGTTTACTACCCACGTTGGAAGAAAGGCCTCTATTGTCAGG
CCGCACAAAACCAGTTCCGCCACCATCCTCTCGACTATATTGAAGCGATGGAACAGGCCATCCGGCAGATGGTCAAGCGC
CTGTCAGAAGAACAACGTCAACATATTGTGGGTATTGGTGTCGACTCTACTGGATCGACGCCAGCGCCGATTGATGAGCA
AGGCCAGGTATTAGCTCTGCGCCCGGATTTTGCAGATAACCCCAATGCCATGTTTGTGTTGTGGAAAGATCACACTGCAA
TTGAGGAGGCCGAAGAAATTAACCGTTTATGCCGTAGCGGTGAGTTTGCGGACTATTCGCGCTATATCGGTGGGGTTTAT
TCCTCTGAGTGGTTCTGGGCAAAAATTCTACATGTCACCCGTGCTGATGTGGCTGTTCGTGAGGCGGCAGTGTCATGGAT
TGAGCTGTGTGACTGGGTACCGGCCCTCTTGTCTGGTACCACCGCACCGCAGGATATCCAGCGTGGCCGTTGCAGCGCCG
GACATAAAAGTTTATGGCACCCTTCATGGGGCGGATTACCCCCACGAGCGTTCCTCGCGGCATTAGATACCAGCCTGGTT
AATGATCTCGATTATCCCATGTTTACTGACACCTACACCGCCGAACGACCGGTAGGCCAGATCACCGCCGAGTGGGCTGA
GCGTCTGGGCTTACCAACGACGGTGATCCTTTCTGGTGGAGCATTTGATTGCCATATGGGGGCGGTGGGAGCCGGTGCTC
AACCTTATACCTTGGTCAAAGTCATTGGCACGTCCACCTGCGATATCTTGATTGCCGATGACCAACGGGTGGGTGATCGG
GCTATCGCGGGGATTTGTGGTCAGGTTGAAGGCAGTGTATTGCCGGGTTGGATTGGCATGGAAGCGGGTCAATCTGCATT
CGGTGATATGTATGCATGGTTCAGCAATTTGTTGAGTTGGCCACTGCATCAAGCGGCATTGACCCAACCCGAATGGCAGC
CGCAGCTAAAACAGATCGAATCCAACCTACTCGCCTCATTGACCCGCGCATGGGCACAAAACCCGTCTCTCGATCATCTG
CCCGTGGTATTGGATTGGTTTAACGGCCGCCGAACCCCGAATGCTAATCAGCGTTTAAAAGGGGTGATTACCGATCTGAA
TCTGGGTACCGATGCACCAACCCTGTTTGGTGGTTTTATCGCTGCGACCGCCTTTGGTGCCCGCGCCATTATGGAATGTT
TTGAACAGCAAGATATCCCGATTGACAACGTGCTGGCATTGGGAGGGATTGCACGTAAATCGCCGGTGATCATGCAGGTT
TGTGCAGATGTCATGAATCGTCCACTACAGATTGTGGCATCTGATCAATGTTGTGCGCTGGGGGCGGCGATTTTTGCAGC
CGTTGCCGCAGGGGCACACGATGATGTTCCCACCGCCCAACGCCACATGGCATGCAATATTGAGCGCACTCTGATTCCGG
ATCCCGTCCAGGTCGTGCGTTACCAGCAACTTTATCAACGCTATCAGCAGTGGTGTCATACGGCAGAGCCGCATTATGCG
CCAGTTACCAAGGTAATTCACTGA

Upstream 100 bases:

>100_bases
ATACTTCCAGCTATTGGCTCCTCACGTTTCCCCTCGGCTCACTCTTATGGTTATTACCAATGAATTTCTGTTTTTTTTTG
TATGATTAGGAGCAACCACC

Downstream 100 bases:

>100_bases
TATTGACAAGCAGTCTACTTTAACGACATTCACGATAACTGAATGTTTTATATCGAGTAATCATTTATTAAATGGAGTGA
TAGATGGACGTATTCAAGCA

Product: ribulokinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 566

Protein sequence:

>567_residues
MTGNVISADGAIALGLDFGSDSVRVLAVDCQHGTEIDTEVVYYPRWKKGLYCQAAQNQFRHHPLDYIEAMEQAIRQMVKR
LSEEQRQHIVGIGVDSTGSTPAPIDEQGQVLALRPDFADNPNAMFVLWKDHTAIEEAEEINRLCRSGEFADYSRYIGGVY
SSEWFWAKILHVTRADVAVREAAVSWIELCDWVPALLSGTTAPQDIQRGRCSAGHKSLWHPSWGGLPPRAFLAALDTSLV
NDLDYPMFTDTYTAERPVGQITAEWAERLGLPTTVILSGGAFDCHMGAVGAGAQPYTLVKVIGTSTCDILIADDQRVGDR
AIAGICGQVEGSVLPGWIGMEAGQSAFGDMYAWFSNLLSWPLHQAALTQPEWQPQLKQIESNLLASLTRAWAQNPSLDHL
PVVLDWFNGRRTPNANQRLKGVITDLNLGTDAPTLFGGFIAATAFGARAIMECFEQQDIPIDNVLALGGIARKSPVIMQV
CADVMNRPLQIVASDQCCALGAAIFAAVAAGAHDDVPTAQRHMACNIERTLIPDPVQVVRYQQLYQRYQQWCHTAEPHYA
PVTKVIH

Sequences:

>Translated_567_residues
MTGNVISADGAIALGLDFGSDSVRVLAVDCQHGTEIDTEVVYYPRWKKGLYCQAAQNQFRHHPLDYIEAMEQAIRQMVKR
LSEEQRQHIVGIGVDSTGSTPAPIDEQGQVLALRPDFADNPNAMFVLWKDHTAIEEAEEINRLCRSGEFADYSRYIGGVY
SSEWFWAKILHVTRADVAVREAAVSWIELCDWVPALLSGTTAPQDIQRGRCSAGHKSLWHPSWGGLPPRAFLAALDTSLV
NDLDYPMFTDTYTAERPVGQITAEWAERLGLPTTVILSGGAFDCHMGAVGAGAQPYTLVKVIGTSTCDILIADDQRVGDR
AIAGICGQVEGSVLPGWIGMEAGQSAFGDMYAWFSNLLSWPLHQAALTQPEWQPQLKQIESNLLASLTRAWAQNPSLDHL
PVVLDWFNGRRTPNANQRLKGVITDLNLGTDAPTLFGGFIAATAFGARAIMECFEQQDIPIDNVLALGGIARKSPVIMQV
CADVMNRPLQIVASDQCCALGAAIFAAVAAGAHDDVPTAQRHMACNIERTLIPDPVQVVRYQQLYQRYQQWCHTAEPHYA
PVTKVIH
>Mature_566_residues
TGNVISADGAIALGLDFGSDSVRVLAVDCQHGTEIDTEVVYYPRWKKGLYCQAAQNQFRHHPLDYIEAMEQAIRQMVKRL
SEEQRQHIVGIGVDSTGSTPAPIDEQGQVLALRPDFADNPNAMFVLWKDHTAIEEAEEINRLCRSGEFADYSRYIGGVYS
SEWFWAKILHVTRADVAVREAAVSWIELCDWVPALLSGTTAPQDIQRGRCSAGHKSLWHPSWGGLPPRAFLAALDTSLVN
DLDYPMFTDTYTAERPVGQITAEWAERLGLPTTVILSGGAFDCHMGAVGAGAQPYTLVKVIGTSTCDILIADDQRVGDRA
IAGICGQVEGSVLPGWIGMEAGQSAFGDMYAWFSNLLSWPLHQAALTQPEWQPQLKQIESNLLASLTRAWAQNPSLDHLP
VVLDWFNGRRTPNANQRLKGVITDLNLGTDAPTLFGGFIAATAFGARAIMECFEQQDIPIDNVLALGGIARKSPVIMQVC
ADVMNRPLQIVASDQCCALGAAIFAAVAAGAHDDVPTAQRHMACNIERTLIPDPVQVVRYQQLYQRYQQWCHTAEPHYAP
VTKVIH

Specific function: Unknown

COG id: COG1069

COG function: function code C; Ribulose kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulokinase family

Homologues:

Organism=Escherichia coli, GI1786249, Length=553, Percent_Identity=72.1518987341772, Blast_Score=819, Evalue=0.0,
Organism=Drosophila melanogaster, GI24657106, Length=540, Percent_Identity=26.8518518518519, Blast_Score=103, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24657102, Length=540, Percent_Identity=26.8518518518519, Blast_Score=103, Evalue=5e-22,
Organism=Drosophila melanogaster, GI21356323, Length=415, Percent_Identity=27.2289156626506, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ARAB_YERPA (Q1C7J2)

Other databases:

- EMBL:   CP000308
- RefSeq:   YP_651525.1
- ProteinModelPortal:   Q1C7J2
- STRING:   Q1C7J2
- GeneID:   4120250
- GenomeReviews:   CP000308_GR
- KEGG:   ypa:YPA_1614
- eggNOG:   COG1069
- HOGENOM:   HBG312681
- OMA:   NGRRTPD
- ProtClustDB:   PRK04123
- BioCyc:   YPES360102:YPA_1614-MONOMER
- HAMAP:   MF_00520
- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR005929
- PANTHER:   PTHR10196
- TIGRFAMs:   TIGR01234

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N

EC number: =2.7.1.16

Molecular weight: Translated: 62205; Mature: 62074

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGNVISADGAIALGLDFGSDSVRVLAVDCQHGTEIDTEVVYYPRWKKGLYCQAAQNQFR
CCCCEEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEEHHHHHHHC
HHPLDYIEAMEQAIRQMVKRLSEEQRQHIVGIGVDSTGSTPAPIDEQGQVLALRPDFADN
CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCC
PNAMFVLWKDHTAIEEAEEINRLCRSGEFADYSRYIGGVYSSEWFWAKILHVTRADVAVR
CCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
EAAVSWIELCDWVPALLSGTTAPQDIQRGRCSAGHKSLWHPSWGGLPPRAFLAALDTSLV
HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
NDLDYPMFTDTYTAERPVGQITAEWAERLGLPTTVILSGGAFDCHMGAVGAGAQPYTLVK
HHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCCCEEEEE
VIGTSTCDILIADDQRVGDRAIAGICGQVEGSVLPGWIGMEAGQSAFGDMYAWFSNLLSW
EECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHC
PLHQAALTQPEWQPQLKQIESNLLASLTRAWAQNPSLDHLPVVLDWFNGRRTPNANQRLK
CHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHH
GVITDLNLGTDAPTLFGGFIAATAFGARAIMECFEQQDIPIDNVLALGGIARKSPVIMQV
HHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHH
CADVMNRPLQIVASDQCCALGAAIFAAVAAGAHDDVPTAQRHMACNIERTLIPDPVQVVR
HHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHH
YQQLYQRYQQWCHTAEPHYAPVTKVIH
HHHHHHHHHHHHCCCCCCCCCHHHHCC
>Mature Secondary Structure 
TGNVISADGAIALGLDFGSDSVRVLAVDCQHGTEIDTEVVYYPRWKKGLYCQAAQNQFR
CCCEEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEEHHHHHHHC
HHPLDYIEAMEQAIRQMVKRLSEEQRQHIVGIGVDSTGSTPAPIDEQGQVLALRPDFADN
CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCC
PNAMFVLWKDHTAIEEAEEINRLCRSGEFADYSRYIGGVYSSEWFWAKILHVTRADVAVR
CCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
EAAVSWIELCDWVPALLSGTTAPQDIQRGRCSAGHKSLWHPSWGGLPPRAFLAALDTSLV
HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
NDLDYPMFTDTYTAERPVGQITAEWAERLGLPTTVILSGGAFDCHMGAVGAGAQPYTLVK
HHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCCCEEEEE
VIGTSTCDILIADDQRVGDRAIAGICGQVEGSVLPGWIGMEAGQSAFGDMYAWFSNLLSW
EECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHC
PLHQAALTQPEWQPQLKQIESNLLASLTRAWAQNPSLDHLPVVLDWFNGRRTPNANQRLK
CHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHH
GVITDLNLGTDAPTLFGGFIAATAFGARAIMECFEQQDIPIDNVLALGGIARKSPVIMQV
HHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHH
CADVMNRPLQIVASDQCCALGAAIFAAVAAGAHDDVPTAQRHMACNIERTLIPDPVQVVR
HHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHH
YQQLYQRYQQWCHTAEPHYAPVTKVIH
HHHHHHHHHHHHCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA