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The map label for this gene is rnfB

Identifier: 218929341

GI number: 218929341

Start: 2522185

End: 2522751

Strand: Reverse

Name: rnfB

Synonym: YPO2245

Alternate gene names: 218929341

Gene position: 2522751-2522185 (Counterclockwise)

Preceding gene: 218929342

Following gene: 218929340

Centisome position: 54.21

GC content: 53.79

Gene sequence:

>567_bases
ATGATGTCTTTATGGATCGCCATAGGCGCACTCAGTACATTGGCGCTGGTCTCCGGCGTGGTGCTCGGCTTCGCCGCCCG
TCGCTTCCAGGTTGATGAAGATCCGGTCGTCGAGCAAGTGGATGCCATTTTGCCACAGAGCCAATGTGGGCAATGTGGTT
ACCCTGGTTGCCGCCCCTATGCCGAGGCGGTCTCTACTGGTGGTGAAAAAATCAACAAATGCGCGCCGGGTGGCGAGCAG
GTGATGCTGAAACTGGCCGAATTATTGGCGGTCGAGCCACAACCGTTGGATGGTGATGAAAGTGCAGCCCATCCACAACG
TAAAGTGGCGTTTATCGATGAAGCAAACTGCATCGGTTGTACTAAATGTATTCAGGCCTGTCCGGTTGATGCCATCATCG
GGGCGACACGGGCTATGCACACCGTATTATCTGATCTCTGCACTGGCTGCGACCTGTGTGTTGCCCCCTGCCCAACCGAT
TGTATTGAAATGATCCCGGTTGCTACCACCACCGCCAACTGGAAATGGGATTTGAATACTATTCCGGTCAAGAATCTGCC
TAATTAG

Upstream 100 bases:

>100_bases
CGGATGTCCCTGCGCCCTTCCGTGGGTCTTCTATCGCCTTAATCACTGCCGGGCTGATGTCTCTGGCCTTTATGGGCTTT
ACCGGTTTGGTGAAGTTCTA

Downstream 100 bases:

>100_bases
TTGGTCGCCTCACAAATGATTCCGGTAAAAATGATAGACGTGGAGCAACATGTTTAAGCTGTTTACTGCCCGCCAACATG
ACAAGATCTGGGATTTCGAT

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MMSLWIAIGALSTLALVSGVVLGFAARRFQVDEDPVVEQVDAILPQSQCGQCGYPGCRPYAEAVSTGGEKINKCAPGGEQ
VMLKLAELLAVEPQPLDGDESAAHPQRKVAFIDEANCIGCTKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTD
CIEMIPVATTTANWKWDLNTIPVKNLPN

Sequences:

>Translated_188_residues
MMSLWIAIGALSTLALVSGVVLGFAARRFQVDEDPVVEQVDAILPQSQCGQCGYPGCRPYAEAVSTGGEKINKCAPGGEQ
VMLKLAELLAVEPQPLDGDESAAHPQRKVAFIDEANCIGCTKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTD
CIEMIPVATTTANWKWDLNTIPVKNLPN
>Mature_188_residues
MMSLWIAIGALSTLALVSGVVLGFAARRFQVDEDPVVEQVDAILPQSQCGQCGYPGCRPYAEAVSTGGEKINKCAPGGEQ
VMLKLAELLAVEPQPLDGDESAAHPQRKVAFIDEANCIGCTKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTD
CIEMIPVATTTANWKWDLNTIPVKNLPN

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787915, Length=187, Percent_Identity=72.192513368984, Blast_Score=289, Evalue=7e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFB_YERPA (Q1C7K2)

Other databases:

- EMBL:   CP000308
- RefSeq:   YP_651515.1
- ProteinModelPortal:   Q1C7K2
- SMR:   Q1C7K2
- STRING:   Q1C7K2
- GeneID:   4120240
- GenomeReviews:   CP000308_GR
- KEGG:   ypa:YPA_1604
- eggNOG:   COG2878
- HOGENOM:   HBG549899
- OMA:   KFKVEGD
- ProtClustDB:   PRK05113
- BioCyc:   YPES360102:YPA_1604-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00463
- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202
- PIRSF:   PIRSF005784
- TIGRFAMs:   TIGR01944

Pfam domain/function: PF00037 Fer4; PF04060 FeS

EC number: NA

Molecular weight: Translated: 19887; Mature: 19887

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
6.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSLWIAIGALSTLALVSGVVLGFAARRFQVDEDPVVEQVDAILPQSQCGQCGYPGCRPY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCCCCCCCCCHH
AEAVSTGGEKINKCAPGGEQVMLKLAELLAVEPQPLDGDESAAHPQRKVAFIDEANCIGC
HHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHH
TKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTDCIEMIPVATTTANWKWDLNT
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHCCCCCCCCCEECCCC
IPVKNLPN
CCCCCCCC
>Mature Secondary Structure
MMSLWIAIGALSTLALVSGVVLGFAARRFQVDEDPVVEQVDAILPQSQCGQCGYPGCRPY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCCCCCCCCCHH
AEAVSTGGEKINKCAPGGEQVMLKLAELLAVEPQPLDGDESAAHPQRKVAFIDEANCIGC
HHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHH
TKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTDCIEMIPVATTTANWKWDLNT
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHCCCCCCCCCEECCCC
IPVKNLPN
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA