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The map label for this gene is rnfD

Identifier: 218929338

GI number: 218929338

Start: 2517692

End: 2518747

Strand: Reverse

Name: rnfD

Synonym: YPO2242

Alternate gene names: 218929338

Gene position: 2518747-2517692 (Counterclockwise)

Preceding gene: 218929340

Following gene: 218929337

Centisome position: 54.12

GC content: 50.76

Gene sequence:

>1056_bases
TTGCAGATTGCCAGTTCCCCTTTTACCCACAATCAACGCAGTACCCGTCGTATTATGCTGCTGGTTATTCTGGCCTGTAT
TCCGGGGATTATCGCCCAGACTTACTTCTTCGGTTATGGCAGCCTGATTCAAGTCATGCTGGCTATGATCACTGCACTGT
TGGCCGAAGGTGCCGTATTGCAGTTACGTAAACAACCCGTCATGGCGCGGTTACAAGATAACTCAGCCCTACTGACTGCC
TTATTGTTGGGGATAAGCCTCCCCCCATTGGCCCCCTGGTGGATGATCGTGCTGGGCACGCTATTTGCTATTGTCATTGC
CAAACAACTCTATGGTGGCCTAGGGCAGAACCCGTTTAACCCGGCAATGGTCGGTTATGTTGTGCTCCTTATTTCATTTC
CGGTACAAATGACCAGTTGGCTGCCACCGCTACCGTTGCAAGGAACGTCGGTGGGATTCTATGACAGTCTCTTAACCATT
TTCACCGGTTATACCCACAGTGGTGAGAATATTCATCAGCTCCAAGTTGGCTATGACGGCATCAGCCAAGCGACGCCACT
GGATACGTTTAAGACCTCGCTACGTTCACAGCCAGCAGATCAAATTCTGCAACAGCCCATATTTGGCGGTGTGCTGGCGG
GTTTAGGCTGGCAATGGGTTAATACCGGCTTTCTGGTTGGCGGCTTATTGCTACTGTGGCGTAAAGCTATTCACTGGCAT
ATTCCCGTGAGCTTCCTGCTCGCCTTAGGAGGTTGTGCCGCAGTGAGCTGGATGATTGCTCCACAAAGCTTTGCCTCACC
AATGCTACATTTGTTCTCCGGTGCCACCATGTTAGGTGCATTTTTCATTGCTACCGATCCTGTCAGTGCCTCTACAACAC
CCCGTGGCCGCCTGATATTTGGTGCCCTCATTGGTATTCTGGTGTGGCTAATCCGGGTATATGGCGGCTATCCGGATAGT
GTTGCTTTTGCCGTGTTGCTCGCCAATATTACAGTTCCGTTGATTGACCACTATACCCAACCTCGGGTCTATGGCCATAA
AAGCGGGCACAAATAA

Upstream 100 bases:

>100_bases
GCCCACGCGATCCCTACGTTTGAAAGCCCTGATAAGTATTCTGACATATGGTTGCAATTTCATGAAATTCAGGCCTGTAA
CACCGACCCAGAACAAAGGG

Downstream 100 bases:

>100_bases
GGAGCCGTTATGCTAAAAACAATGAGGCGTCACGGCATCACTCTCGCGCTGTTTGCTGCCGGTGCCACAGGGTTAACTGC
GGTTGTTAACTCACTGACTG

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVLQLRKQPVMARLQDNSALLTA
LLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTI
FTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNTGFLVGGLLLLWRKAIHWH
IPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDPVSASTTPRGRLIFGALIGILVWLIRVYGGYPDS
VAFAVLLANITVPLIDHYTQPRVYGHKSGHK

Sequences:

>Translated_351_residues
MQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVLQLRKQPVMARLQDNSALLTA
LLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTI
FTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNTGFLVGGLLLLWRKAIHWH
IPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDPVSASTTPRGRLIFGALIGILVWLIRVYGGYPDS
VAFAVLLANITVPLIDHYTQPRVYGHKSGHK
>Mature_351_residues
MQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVLQLRKQPVMARLQDNSALLTA
LLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTI
FTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNTGFLVGGLLLLWRKAIHWH
IPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDPVSASTTPRGRLIFGALIGILVWLIRVYGGYPDS
VAFAVLLANITVPLIDHYTQPRVYGHKSGHK

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family

Homologues:

Organism=Escherichia coli, GI1787917, Length=349, Percent_Identity=68.7679083094556, Blast_Score=497, Evalue=1e-142,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFD_YERPE (Q8ZED2)

Other databases:

- EMBL:   AL590842
- EMBL:   AE009952
- EMBL:   AE017042
- PIR:   AD0273
- RefSeq:   NP_669396.1
- RefSeq:   NP_993379.1
- RefSeq:   YP_002347213.1
- ProteinModelPortal:   Q8ZED2
- GeneID:   1147030
- GeneID:   1175075
- GeneID:   2764460
- GenomeReviews:   AE009952_GR
- GenomeReviews:   AE017042_GR
- GenomeReviews:   AL590842_GR
- KEGG:   ype:YPO2242
- KEGG:   ypk:y2083
- KEGG:   ypm:YP_2040
- HOGENOM:   HBG454412
- OMA:   NPAMVAY
- ProtClustDB:   PRK00816
- BioCyc:   YPES187410:Y2083-MONOMER
- BioCyc:   YPES214092:YPO2242-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00462
- InterPro:   IPR011303
- InterPro:   IPR004338
- TIGRFAMs:   TIGR01946

Pfam domain/function: PF03116 NQR2_RnfD_RnfE

EC number: NA

Molecular weight: Translated: 38113; Mature: 38113

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xe105d58)-; HASH(0x4cfecd54)-; HASH(0xe01dbf4)-; HASH(0xe2bc0f4)-; HASH(0xe1802e4)-; HASH(0x4d00a388)-; HASH(0xdc15120)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
QLRKQPVMARLQDNSALLTALLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFN
HHHHCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PAMVGYVVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTIFTGYTHSGENIHQLQVGYDG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCC
ISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNTGFLVGGLLLLWRKAIHWH
CCCCCCHHHHHHHHHCCCHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDPVSASTTPRGRLIF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHH
GALIGILVWLIRVYGGYPDSVAFAVLLANITVPLIDHYTQPRVYGHKSGHK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
>Mature Secondary Structure
MQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
QLRKQPVMARLQDNSALLTALLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFN
HHHHCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PAMVGYVVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTIFTGYTHSGENIHQLQVGYDG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCC
ISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNTGFLVGGLLLLWRKAIHWH
CCCCCCHHHHHHHHHCCCHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDPVSASTTPRGRLIF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHH
GALIGILVWLIRVYGGYPDSVAFAVLLANITVPLIDHYTQPRVYGHKSGHK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430