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The map label for this gene is quuD [H]

Identifier: 218929198

GI number: 218929198

Start: 2368704

End: 2369093

Strand: Direct

Name: quuD [H]

Synonym: YPO2091

Alternate gene names: 218929198

Gene position: 2368704-2369093 (Clockwise)

Preceding gene: 218929197

Following gene: 218929199

Centisome position: 50.9

GC content: 43.85

Gene sequence:

>390_bases
ATGCGTGACATTCAACTTGTTCTTGAACGCTGGGGTGCATGGGTGGCTGATAATAGAGAAGATGTCTATTGGCCCCCAAT
CGCAGCCGGATTTTCTGGACTGATACCATCAAAAGTAAAAAGCCGAACTCAATGTTGTGACGAGGATGGGCTAATTATTT
CGGGCATTATGGCTGGATTAAACAGTAAGCATCCAGTCGTTCATAGCTTGTTGTTTGATTATTACGTATTTGGCAAAACA
TTTATGCAGCTATCGAAAGAGCATCACTGCTCTGATACTCACATTGGCAAAAAGCTACAGAACGCCGAAGGGGTTATTGA
CGGCTACCTGATGGCATTAGAAGTAAAGCTCGAAATGGATAAACAAGTCAGGCGGGAGTTAGCAGCTTGA

Upstream 100 bases:

>100_bases
GCATGAAATGACGAACTACCGGCGTGATGACTATATCCGAATCCGGGATGAGTACCGGGCAAAAACCAAAGCACTTAAAA
AACTTCGAGAGGCTGCATAA

Downstream 100 bases:

>100_bases
CGATTGACGGTATTCGGGGCTATATTTCCTGTACACCTGCAAAATCAGGTGTCGGGATTTGCACCCTGGATATCACAACA
ACGCATAGCCGCGTTTGCGG

Product: putative phage antitermination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MRDIQLVLERWGAWVADNREDVYWPPIAAGFSGLIPSKVKSRTQCCDEDGLIISGIMAGLNSKHPVVHSLLFDYYVFGKT
FMQLSKEHHCSDTHIGKKLQNAEGVIDGYLMALEVKLEMDKQVRRELAA

Sequences:

>Translated_129_residues
MRDIQLVLERWGAWVADNREDVYWPPIAAGFSGLIPSKVKSRTQCCDEDGLIISGIMAGLNSKHPVVHSLLFDYYVFGKT
FMQLSKEHHCSDTHIGKKLQNAEGVIDGYLMALEVKLEMDKQVRRELAA
>Mature_129_residues
MRDIQLVLERWGAWVADNREDVYWPPIAAGFSGLIPSKVKSRTQCCDEDGLIISGIMAGLNSKHPVVHSLLFDYYVFGKT
FMQLSKEHHCSDTHIGKKLQNAEGVIDGYLMALEVKLEMDKQVRRELAA

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 1 family [H]

Homologues:

Organism=Escherichia coli, GI1786763, Length=120, Percent_Identity=65, Blast_Score=169, Evalue=4e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010534 [H]

Pfam domain/function: PF06530 Phage_antitermQ [H]

EC number: NA

Molecular weight: Translated: 14578; Mature: 14578

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDIQLVLERWGAWVADNREDVYWPPIAAGFSGLIPSKVKSRTQCCDEDGLIISGIMAGL
CCHHHHHHHHHCCHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHCC
NSKHPVVHSLLFDYYVFGKTFMQLSKEHHCSDTHIGKKLQNAEGVIDGYLMALEVKLEMD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
KQVRRELAA
HHHHHHHCC
>Mature Secondary Structure
MRDIQLVLERWGAWVADNREDVYWPPIAAGFSGLIPSKVKSRTQCCDEDGLIISGIMAGL
CCHHHHHHHHHCCHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHCC
NSKHPVVHSLLFDYYVFGKTFMQLSKEHHCSDTHIGKKLQNAEGVIDGYLMALEVKLEMD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
KQVRRELAA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8648624; 9278503 [H]