Click here to switch to the map view.

The map label for this gene is ninB [H]

Identifier: 218929196

GI number: 218929196

Start: 2367596

End: 2368024

Strand: Direct

Name: ninB [H]

Synonym: YPO2089

Alternate gene names: 218929196

Gene position: 2367596-2368024 (Clockwise)

Preceding gene: 218929192

Following gene: 218929197

Centisome position: 50.88

GC content: 51.28

Gene sequence:

>429_bases
GTGTTATGCGGTGATCAATACAAGCGAAATGCCATCCAGTTTATAAGTCAACTACCTGTTAATCCTGATAAACCACTCCT
GATCACAATCCAAGAGCGAACCCGCACATTAGACCAGAATGCGCGTCTATGGGCCACGCTTGGCGATATCGCTAAACAGG
TTGTATGGCACGGACAGAAACTTAGCAGTGAGGACTGGAAGCACATATTCACTGCATCACTGAAAGGGCAGAGGTCAGCG
CCAGGGCTTGAAGGTGGCTTTGTTGTACTGGGGCAATCAACAAGCCGCATGACCGTTGGCGAGCTGCGCGACCTGATAGA
GCTGATCAATGCTTTCGGCGCTACGCATGGCGTTAAGTTCAGCGATGAATCACGGCTTGCAATTGAGTGGGCCAACCGGT
TCGGTGACAAGGGAAAGGTGGCAGCATGA

Upstream 100 bases:

>100_bases
ACGTCGCCATCTAAATCGTTATAAATCTCCGCGTAGCTTCGCTCTTTTCTCAGCAATACAGACGCCGCGCCGGAGAAAGA
AAATGGATAAAAAGGTCTTC

Downstream 100 bases:

>100_bases
GTGAATCTGACTGGCTAATAATTTGCGCGTTCATCTGCTCTGTAATTTATGCAGGGATAAGAGGGAGACGAAGATGAACA
AGTTACCAAAAAATCGTAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MLCGDQYKRNAIQFISQLPVNPDKPLLITIQERTRTLDQNARLWATLGDIAKQVVWHGQKLSSEDWKHIFTASLKGQRSA
PGLEGGFVVLGQSTSRMTVGELRDLIELINAFGATHGVKFSDESRLAIEWANRFGDKGKVAA

Sequences:

>Translated_142_residues
MLCGDQYKRNAIQFISQLPVNPDKPLLITIQERTRTLDQNARLWATLGDIAKQVVWHGQKLSSEDWKHIFTASLKGQRSA
PGLEGGFVVLGQSTSRMTVGELRDLIELINAFGATHGVKFSDESRLAIEWANRFGDKGKVAA
>Mature_142_residues
MLCGDQYKRNAIQFISQLPVNPDKPLLITIQERTRTLDQNARLWATLGDIAKQVVWHGQKLSSEDWKHIFTASLKGQRSA
PGLEGGFVVLGQSTSRMTVGELRDLIELINAFGATHGVKFSDESRLAIEWANRFGDKGKVAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ninB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008711 [H]

Pfam domain/function: PF05772 NinB [H]

EC number: NA

Molecular weight: Translated: 15778; Mature: 15778

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCGDQYKRNAIQFISQLPVNPDKPLLITIQERTRTLDQNARLWATLGDIAKQVVWHGQK
CCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
LSSEDWKHIFTASLKGQRSAPGLEGGFVVLGQSTSRMTVGELRDLIELINAFGATHGVKF
CCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
SDESRLAIEWANRFGDKGKVAA
CCCCCHHEEEHHHCCCCCCCCC
>Mature Secondary Structure
MLCGDQYKRNAIQFISQLPVNPDKPLLITIQERTRTLDQNARLWATLGDIAKQVVWHGQK
CCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
LSSEDWKHIFTASLKGQRSAPGLEGGFVVLGQSTSRMTVGELRDLIELINAFGATHGVKF
CCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
SDESRLAIEWANRFGDKGKVAA
CCCCCHHEEEHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]