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The map label for this gene is ybdH [H]

Identifier: 218928695

GI number: 218928695

Start: 1770218

End: 1771309

Strand: Direct

Name: ybdH [H]

Synonym: YPO1556

Alternate gene names: 218928695

Gene position: 1770218-1771309 (Clockwise)

Preceding gene: 218928692

Following gene: 218928696

Centisome position: 38.04

GC content: 54.95

Gene sequence:

>1092_bases
ATGAGCGCGAACGCAATTCGGGTGCAGGTGGGGCCTGCCAACTATTTTTCTTTTCCGGGCGCTATCGACAAACTGAGCGA
GTTTTATCCTCAGGCGGCACTGGATAAGGCTTTGTGGATTTATGGTGAGCGTGCATTGGCCGCCGCCCAGGATTACCTGC
CCAAGGCGTTTCACGGGCCACAGGCCGTGCGTGCTAAATTCTCAACGCATTGTAGTCAGTCTACGGTCGCTGATTTGGTC
AGCGCGGCGGGCGGTGATCGGCAGGTCGTAATTGGTATCGGGGGCGGTGCAGTCCTGGATACCGCCAAAGTTGTGGCCCG
TCAGTTGGGGGTACCGCTGGTGGCTATCCCGACTATCGCTGCTACCTGTGCCGCCTGGACCCCGCTTTCGGTCTGGTATA
ACGAAGCCGGGCAAGCGTTGAATTTTGAAATTTTCAACGATGCCAACCATTTGGTACTGGTCGAGCCACGTATCATGTTA
CACGCGCCAGTGGAATATCTGCTGGCGGGGATCGGCGACACACTGGCGAAATGGTATGAGGCAGTGGTCCTTAGCCCGCA
GCCAGAAACCCTATCGCTGACCGTCCGCTTAGGCTTACAGGCCGCTCTGGAGATTCGCAATGTGTTGCTCAAGCAGAGCG
AAGCGGCATTGCAGGCGGTTGCTCAGGGTGAATTGACACAAGATTTCCTTGATGTGGTTGATGCCATTATTGCCGGCGGA
GGGATGGTCGGCGGGTTAGGGGAGCGCTATACCCGAGTTGCTGCTGCGCATGCGGTACACAATGGCCTGACGTTGCTGCC
ACAAACGGAGCACTTCTTGCATGGCACCAAAGTGGCATACGGCATCTTGGTACAAACGGCATTGCTGGGACAAGATGAGG
TGCTGCGGTCACTGATTGTTGCTTTTAATCAATTAGGTTTGCCAACCCATTTGGCGGCGTTAGATGTTGATATTAATGAC
CGGGAGGCAATAGACCGGGTTATTGGCCGGATCCTGAAACCCGGAGAGTCAATACATTACCTGCCAATCGCCCTGAATTC
AGAAAAAGTATGGGCAGCGATTGAGCAAGTGGAAATCGCGGCTCAGCACTGA

Upstream 100 bases:

>100_bases
CGAAACGCGTTGGCGTTGCAGTCAGGCAGCCCTTAAGATGGGGAAAAACGGGGTCACATCGCAAGCTGTGAAGCACACTG
ATTTGGAAGGAATAAAGGGC

Downstream 100 bases:

>100_bases
TACGGCGCGGGAGTCGGTATTTGAGTTAAGGCTGAAAAAGAATAGGGTTTAAGGTGATTTAACATCTTGTTTTTTGCTCT
CAAGTTAGGGCAAAATACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MSANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGPQAVRAKFSTHCSQSTVADLV
SAAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIAATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIML
HAPVEYLLAGIGDTLAKWYEAVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGG
GMVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIVAFNQLGLPTHLAALDVDIND
REAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIAAQH

Sequences:

>Translated_363_residues
MSANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGPQAVRAKFSTHCSQSTVADLV
SAAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIAATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIML
HAPVEYLLAGIGDTLAKWYEAVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGG
GMVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIVAFNQLGLPTHLAALDVDIND
REAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIAAQH
>Mature_362_residues
SANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGPQAVRAKFSTHCSQSTVADLVS
AAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIAATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIMLH
APVEYLLAGIGDTLAKWYEAVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGGG
MVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIVAFNQLGLPTHLAALDVDINDR
EAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIAAQH

Specific function: Unknown

COG id: COG0371

COG function: function code C; Glycerol dehydrogenase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786815, Length=358, Percent_Identity=66.2011173184357, Blast_Score=456, Evalue=1e-130,
Organism=Escherichia coli, GI87082352, Length=357, Percent_Identity=33.8935574229692, Blast_Score=157, Evalue=7e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211
- InterPro:   IPR016205 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 38762; Mature: 38631

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS00913 ADH_IRON_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGP
CCCCEEEEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHCCC
QAVRAKFSTHCSQSTVADLVSAAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIA
HHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEHHHHH
ATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIMLHAPVEYLLAGIGDTLAKWYE
HHHHCCCHHHHHHHCCCCEEEEEEECCCCCEEEECCCEEECCCHHHHHHHHHHHHHHHHH
AVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGG
HEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
GMVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIV
CCCCCHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AFNQLGLPTHLAALDVDINDREAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIA
HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHH
AQH
CCC
>Mature Secondary Structure 
SANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGP
CCCEEEEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHCCC
QAVRAKFSTHCSQSTVADLVSAAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIA
HHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEHHHHH
ATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIMLHAPVEYLLAGIGDTLAKWYE
HHHHCCCHHHHHHHCCCCEEEEEEECCCCCEEEECCCEEECCCHHHHHHHHHHHHHHHHH
AVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGG
HEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
GMVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIV
CCCCCHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AFNQLGLPTHLAALDVDINDREAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIA
HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHH
AQH
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1848300; 7567469 [H]