Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 218928446

GI number: 218928446

Start: 1455166

End: 1456164

Strand: Direct

Name: rbsC [H]

Synonym: YPO1295

Alternate gene names: 218928446

Gene position: 1455166-1456164 (Clockwise)

Preceding gene: 218928445

Following gene: 218928448

Centisome position: 31.27

GC content: 55.16

Gene sequence:

>999_bases
ATGGATAAGGCAACCGAGACCCGCCGCGAGGGAGCACCTACCGCGAGCAAACTCAACGGCCAGGCCATGCTGGGCTGGGT
TTTACACCATATTGTCTGGATCTGGCTGATTGCACTGGTTGTCATCTTTGGTGTCTTCAATGAATTTTTCCTGACGATAT
CCAATCTGCAAAACGTGATGGTGCAGGCCACGGTTTTGGGAACCTTAGGGCTGGCGGTGGCACTGCCGCTGCTGGTGGCT
GAGATTGACTTGTCGATTCCGGCAAATGCGGGTTTCTCGGCGGCGGTGGGGGCGATGGCTTATGCCGAACTGGGGCTGCC
GTGGCCTATTGCAGCATTAATAGGTTTACTGGTTGGCACATTTATCGGTTTCTTCAATGGGGTGTGCATCACCCGATTGA
AAATGGTCTCGCTGATAGAGACGTTGGCGATGATGATTATTATCCAGGGCGCGCTGTTGGCGCTGACACAGGGCAAGACC
CTGACAAACCTTTCTGAAGGTTATATTTGGATTGGCCAGGCGACCATCGGGGGGTGGCCCCTGATGCCGGTGGTGTTTCT
TCTGGTGCTGGCGGTGATGGGGGCGGTGCTGAAGTATACGGTGTTAGGCCGTTCGATCTATGCCGTCGGTGGTAATCCTG
TTGCGTCAAACTCCGCCGGGATTCGGGTCGCGCGGGTCAAAATTATTGCTTACACGATTTCAGGGTTCCTTGCCGCACTT
GCTGGCTTTTTGTTGGCATCGTGGCAGATGGCCATCACCTCAAACCAAGGCTCGAGCTACTTGCTCTACGCCATCGCCGC
GCCCATTATCGGCGGCGTCAGTGTTTTTGGTGGGCACGGTAACGTCAAGGGGGTGCTGGGCGGTGTGCTGCTGCTGACGG
TGATCCAAGTTGGCCTCGCCATTGTCAATGTCCCTTCGTTCTATGTCGGCATGATTGGCGGGGTGATCATTTTTATCGCT
GTCGCCATTGATGCTTTCCGGATCCGTTACTTCGGATAG

Upstream 100 bases:

>100_bases
TTAAAGAGATATTGACGGGAGATGACATCACCGCCGAACGTCTGCGGGCATCTGTGCAGGCATAAAGCCACGGGATAATA
ACCAGAGCGGAGAGAGGGAA

Downstream 100 bases:

>100_bases
CCCAGCGACCCGCTAATCCAGTTTTCTACTGATTAATCCCATGTTCTGCTGACTAAAGCCATATTCTACTGACTAAACCC
ATGTTCTACTGACTGGCCCA

Product: putative ABC transport integral membrane subunit

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVMVQATVLGTLGLAVALPLLVA
EIDLSIPANAGFSAAVGAMAYAELGLPWPIAALIGLLVGTFIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKT
LTNLSEGYIWIGQATIGGWPLMPVVFLLVLAVMGAVLKYTVLGRSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLAIVNVPSFYVGMIGGVIIFIA
VAIDAFRIRYFG

Sequences:

>Translated_332_residues
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVMVQATVLGTLGLAVALPLLVA
EIDLSIPANAGFSAAVGAMAYAELGLPWPIAALIGLLVGTFIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKT
LTNLSEGYIWIGQATIGGWPLMPVVFLLVLAVMGAVLKYTVLGRSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLAIVNVPSFYVGMIGGVIIFIA
VAIDAFRIRYFG
>Mature_332_residues
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVMVQATVLGTLGLAVALPLLVA
EIDLSIPANAGFSAAVGAMAYAELGLPWPIAALIGLLVGTFIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKT
LTNLSEGYIWIGQATIGGWPLMPVVFLLVLAVMGAVLKYTVLGRSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLAIVNVPSFYVGMIGGVIIFIA
VAIDAFRIRYFG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=307, Percent_Identity=32.2475570032573, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1790524, Length=320, Percent_Identity=32.8125, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI145693152, Length=204, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788896, Length=301, Percent_Identity=30.8970099667774, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1789992, Length=130, Percent_Identity=37.6923076923077, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=30.1038062283737, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788471, Length=330, Percent_Identity=30.9090909090909, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787794, Length=293, Percent_Identity=27.6450511945392, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082395, Length=280, Percent_Identity=27.8571428571429, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693214, Length=238, Percent_Identity=30.2521008403361, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34809; Mature: 34809

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVM
CCCCHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQATVLGTLGLAVALPLLVAEIDLSIPANAGFSAAVGAMAYAELGLPWPIAALIGLLVGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKTLTNLSEGYIWIGQATIGGWP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCC
LMPVVFLLVLAVMGAVLKYTVLGRSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHH
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLA
HHHHHHHHHHEEECCCCCCEEHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHH
IVNVPSFYVGMIGGVIIFIAVAIDAFRIRYFG
HHCCHHHHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVM
CCCCHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQATVLGTLGLAVALPLLVAEIDLSIPANAGFSAAVGAMAYAELGLPWPIAALIGLLVGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKTLTNLSEGYIWIGQATIGGWP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCC
LMPVVFLLVLAVMGAVLKYTVLGRSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHH
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLA
HHHHHHHHHHEEECCCCCCEEHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHH
IVNVPSFYVGMIGGVIIFIAVAIDAFRIRYFG
HHCCHHHHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]